当前解析结果
SmilChr07G001066| 统一新 Gene ID | SmilChr07G001066 |
|---|---|
| 名称 | SmilChr07G001066 |
| 描述 | heat shock 70 kDa protein 14-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7851928 - 7857522 / + |
| NCBI Gene ID | LOC130992230 |
|---|---|
| GeneID | 130992230 |
| locus_tag | - |
| NCBI Name | LOC130992230 |
| 原始查询 | SmilChr07G001066 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heat shock 70 kDa protein 14-like |
| 产物 | heat shock 70 kDa protein 14-like |
| Arabidopsis | AT1G79930 (HSP91)heat shock protein 91 [Source:NCBI gene (formerly Entrezgene);Acc:844333] identity=77.6; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0180800- identity=72.1; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0006457 (protein folding); GO:0140662 (ATP-dependent protein folding chaperone) |
| KEGG | - |
| Pfam | PF00012 (HSP70); PF06723 (MreB_Mbl); PF27508 (HYOU1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992230 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772766.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057772766.1 |
| 3 | Cytoplasm | 细胞质 | 1.00000 | XP_057772766.1 |
| 4 | Cytosol | 细胞质基质 | 1.00000 | XP_057772766.1 |
| 5 | Nuclear body | 核内小体 | 0.20000 | XP_057772766.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7853057 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,A20 |
Chr7:7853126 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,B34,B41,C10,C42 |
Chr7:7853898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,C33,C46 |
Chr7:7854468 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr7:7854537 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B139,C73 |
Chr7:7855201 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr7:7855222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B8,C53 |
Chr7:7855278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B97,C32,C37,C68,C8 |
Chr7:7855368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr7:7856159 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C22 |
Chr7:7856159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr7:7856361 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772766.1PF00012
HSP70 3-690 aa
PF06723
MreB_Mbl 126-374 aa
PF27508
HYOU1_C 715-783 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772766.1 |
Pfam | PF00012 |
HSP70 | Family | 3 | 690 | 1.1e-155 | 520.0 | Hsp70 protein |
XP_057772766.1 |
Pfam | PF06723 |
MreB_Mbl | Family | 126 | 374 | 7.6e-09 | 35.6 | MreB/Mbl protein |
XP_057772766.1 |
Pfam | PF27508 |
HYOU1_C | Domain | 715 | 783 | 2.7e-10 | 41.0 | HYOU1-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。