Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001068`

染色体: Chr07 坐标: 7864516-7867968 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001068`
名称	SmilChr07G001068
描述	MAR-binding filament-like protein 1-1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	7864516 - 7867968 / `+`

ID 对照

NCBI Gene ID	`LOC130992231`
GeneID	`130992231`
locus_tag	`-`
NCBI Name	`LOC130992231`
原始查询	`SmilChr07G001068`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	MAR-binding filament-like protein 1-1
产物	MAR-binding filament-like protein 1-1
Arabidopsis	`AT3G16000` (MFP1) MAR binding filament-like protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:820845] identity=41.5; qcov=0.901; evalue=3.82e-128; confidence=medium
Rice	`Os01g0180300` - identity=35.2; qcov=0.971; evalue=2.08e-101; confidence=medium
GO	GO:0000785 (chromatin); GO:0000793 (condensed chromosome); GO:0000796 (condensin complex); GO:0003682 (chromatin binding); GO:0007076 (mitotic chromosome condensation)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130992231

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057772767.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057772767.1`
3	Chloroplast membrane	叶绿体膜	0.60000	`XP_057772767.1`
4	Chloroplast stroma	叶绿体基质	0.20000	`XP_057772767.1`
5	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057772767.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:7864683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:7864720`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B23,C40,C5,C62
`Chr7:7864740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B23,C40,C5,C62
`Chr7:7864826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B136,B47,C13,C59,D8
`Chr7:7864836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B136,B47,C13,C59,D8
`Chr7:7864850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B136,B47,C13,C59,D8
`Chr7:7864865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B47,C13,D8
`Chr7:7865529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B65,C5,D10
`Chr7:7865695`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr7:7865785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr7:7866392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr7:7866642`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B65,C5,D10

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916785.1
AGATAGGAAAATAGAAAAGGACAAATAAAATAAAATTAAACTACATCCATTGAAAAAACCAGAAATACCAAATGAGGAAAAACTGGTTGGCTCCTCACTCAAGAATCAACAACAACTGAATGATCGAATCAAATGGTTTCTTTAGTCCACTATCCCGTCTTCTCCACGCCCTCTTCCCCAATCTTGCCAAGAAATGCGCTTTCTCGCAGAAGGAAGAGAGCTACCGTAGCTTGTTTGCAGCAACAAAATCGAAAAGATGA...

XM_057916784.1
ATAGGAAAATAGAAAAGGACAAATAAAATAAAATTAAACTACATCCATTGAAAAAACCAGAAATACCAAATGAGGAAAAACTGGTTGGCTCCTCACTCAAGAATCAACAACAACTGAATGATCGAATCAAATGGTTTCTTTAGTCCACTATCCCGTCTTCTCCACGCCCTCTTCCCCAATCTTGCCAAGAAATGCGCTTTCTCGCAGAAGGAAGAGAGCTACCGTAGCTTGTTTGCAGCAACAAAATCGAAAAGATGAAG...

CDS

2 records

下载 CDS FASTA

LOC130992231
ATGGTTTCTTTAGTCCACTATCCCGTCTTCTCCACGCCCTCTTCCCCAATCTTGCCAAGAAATGCGCTTTCTCGCAGAAGGAAGAGAGCTACCGTAGCTTGTTTGCAGCAACAAAATCGAAAAGATGAAGACTTGCGCGGCCGGAGAGCGATTCTTTTTATGGGTTTCGCTGCAATCCCTCTTCTTACGTCGAGGGCCCACGCCGCTCAAGGGCTGCCTGCACCAGAAGATCCGGAGTCGAGGAAATTAGATCAGAAACT...

Protein

2 records

下载 Protein FASTA

XP_057772767.1
MVSLVHYPVFSTPSSPILPRNALSRRRKRATVACLQQQNRKDEDLRGRRAILFMGFAAIPLLTSRAHAAQGLPAPEDPESRKLDQKLEAESGKQKASSNPFLSLLNALGFLGSGVLAALYASLQKEKAAVDATIESLNVKLNGKEATITSMKKTFESELLNEKEARNKALAKANEEKQSLLNQLDVANGTIRGLGKDLQQEKKLVEEKIYEAERLEDSLREAGNEKRELQDQLREKLNSLAILQERINLLSSEVKEKEEN...

XP_057772768.1
MVSLVHYPVFSTPSSPILPRNALSRRRKRATVACLQQQNRKDEDLRGRRAILFMGFAAIPLLTSRAHAAQGLPAPDPESRKLDQKLEAESGKQKASSNPFLSLLNALGFLGSGVLAALYASLQKEKAAVDATIESLNVKLNGKEATITSMKKTFESELLNEKEARNKALAKANEEKQSLLNQLDVANGTIRGLGKDLQQEKKLVEEKIYEAERLEDSLREAGNEKRELQDQLREKLNSLAILQERINLLSSEVKEKEENL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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