当前解析结果
SmilChr07G001069| 统一新 Gene ID | SmilChr07G001069 |
|---|---|
| 名称 | SmilChr07G001069 |
| 描述 | uncharacterized SmilChr07G001069 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7868246 - 7870667 / - |
| NCBI Gene ID | LOC130992237 |
|---|---|
| GeneID | 130992237 |
| locus_tag | - |
| NCBI Name | LOC130992237 |
| 原始查询 | SmilChr07G001069 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | structural molecules protein [Source:NCBI gene (formerly Entrezgene);Acc:28717438]; symbol=AT1G79985; hit=AT1G79985; species=arabidopsis; confidence=high |
| 产物 | structural molecules protein [Source:NCBI gene (formerly Entrezgene);Acc:28717438]; symbol=AT1G79985; hit=AT1G79985; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G79985 (AT1G79985)structural molecules protein [Source:NCBI gene (formerly Entrezgene);Acc:28717438] identity=68.4; qcov=1; evalue=7.68e-76; confidence=high |
| Rice | Os01g0593600- identity=65.1; qcov=1; evalue=8.06e-66; confidence=high |
| GO | GO:0000139 (Golgi membrane); GO:0005802 (trans-Golgi network); GO:0006895 (Golgi to endosome transport); GO:0034067 (protein localization to Golgi apparatus); GO:0043001 (Golgi to plasma membrane protein transport) |
| KEGG | - |
| Pfam | PF09801 (SYS1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992237 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057772775.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057772775.1 |
| 3 | Vesicle | 囊泡 | 0.60000 | XP_057772775.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057772775.1 |
| 5 | Endosome | 内体 | 0.20000 | XP_057772775.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7869203 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr7:7869241 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr7:7869928 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A25,A5,B71,C38,C51 |
Chr7:7869953 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:7870094 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772775.1PF09801
SYS1 5-145 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772775.1 |
Pfam | PF09801 |
SYS1 | Family | 5 | 145 | 7.6e-42 | 143.6 | Integral membrane protein S linking to the trans Golgi network |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。