当前解析结果
SmilChr07G001071| 统一新 Gene ID | SmilChr07G001071 |
|---|---|
| 名称 | SmilChr07G001071 |
| 描述 | mitochondrial arginine transporter BAC2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7875265 - 7877523 / + |
| NCBI Gene ID | LOC130992245 |
|---|---|
| GeneID | 130992245 |
| locus_tag | - |
| NCBI Name | LOC130992245 |
| 原始查询 | SmilChr07G001071 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitochondrial arginine transporter BAC2-like |
| 产物 | mitochondrial arginine transporter BAC2-like |
| Arabidopsis | AT1G79900 (BAC2)Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:844329] identity=70; qcov=0.997; evalue=1.44e-138; confidence=high |
| Rice | Os01g0225000- identity=65.4; qcov=1.05; evalue=9.06e-133; confidence=high |
| GO | GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992245 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057772779.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057772779.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057772779.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057772779.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772779.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7875933 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C31 |
Chr7:7875933 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C31 |
Chr7:7875936 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr7:7875989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,B8,C53 |
Chr7:7875998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,C1 |
Chr7:7876699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:7876720 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A25,B113,B130,B44,C18 |
Chr7:7876762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,C77,C85 |
Chr7:7876832 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr7:7876857 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B118,B8,C53,D5 |
Chr7:7876862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr7:7876873 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,B75,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772779.1PF00153
Mito_carr 11-92 aa
PF00153
Mito_carr 109-194 aa
PF00153
Mito_carr 202-291 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772779.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 11 | 92 | 3.8e-72 | 238.8 | Mitochondrial carrier protein |
XP_057772779.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 109 | 194 | 3.8e-72 | 238.8 | Mitochondrial carrier protein |
XP_057772779.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 202 | 291 | 3.8e-72 | 238.8 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。