Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001084`

染色体: Chr07 坐标: 7933970-7940479 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001084`
名称	SmilChr07G001084
描述	pyrophosphate-energized vacuolar membrane proton pump
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	7933970 - 7940479 / `-`

ID 对照

NCBI Gene ID	`LOC130992258`
GeneID	`130992258`
locus_tag	`-`
NCBI Name	`LOC130992258`
原始查询	`SmilChr07G001084`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pyrophosphate-energized vacuolar membrane proton pump
产物	pyrophosphate-energized vacuolar membrane proton pump
Arabidopsis	`AT1G15690` (AVP1) Inorganic H pyrophosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838138] identity=91.9; qcov=1; evalue=0; confidence=high
Rice	`Os06g0644200` (OVP1) - identity=90.1; qcov=0.996; evalue=0; confidence=high
GO	GO:0004427 (inorganic diphosphate phosphatase activity); GO:0009678 (diphosphate hydrolysis-driven proton transmembrane transporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport)
KEGG	-
Pfam	PF03030 (H_PPase)
InterPro	-
eggNOG	-
NR	GeneID:130992258

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.60000	`XP_057772793.1`
2	Vacuole membrane	液泡膜	0.60000	`XP_057772793.1`
3	Cell membrane	细胞膜	0.20000	`XP_057772793.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057772793.1`
5	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057772793.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:7934330`	`TC`	`T`	1bp_deletion	frameshift_variant	3	A11,B139,C73
`Chr7:7934330`	`TC`	`T`	1bp_deletion	CDS_variant	3	A11,B139,C73
`Chr7:7934412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B51
`Chr7:7934571`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	A23,B137,B15,B86,B91,C10,C85
`Chr7:7934772`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:7934830`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C1,C4
`Chr7:7934956`	`G`	`GCA`	2bp_insertion	frameshift_variant	2	B110,B77
`Chr7:7934956`	`G`	`GCA`	2bp_insertion	CDS_variant	2	B110,B77
`Chr7:7935044`	`G`	`GTA`	2bp_insertion	frameshift_variant	10	A18,B102,B105,B111,B51,C30,C39,C7,C76,C84
`Chr7:7935045`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:7935046`	`GCC`	`G`	2bp_deletion	frameshift_variant	10	A18,B102,B105,B111,B51,C30,C39,C7,C76,C84
`Chr7:7935216`	`ATT`	`A`	2bp_deletion	frameshift_variant	1	B59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772793.1

766 aa

383

766

H_PPase

PF03030 H_PPase 66-751 aa

XP_057772794.1

667 aa

334

667

H_PPase

PF03030 H_PPase 6-652 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772793.1`	Pfam	`PF03030`	H_PPase	Family	66	751	3.3e-258	859.4	Inorganic H+ pyrophosphatase
`XP_057772794.1`	Pfam	`PF03030`	H_PPase	Family	6	652	2.2e-247	823.6	Inorganic H+ pyrophosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916810.1
AAAATTAATAAATATATTATACATAAAGAAAGACGAGATAGTAAATCATGTATGTGATACAACAACCTAGATATAGTAATTGGATACTTTCAAGTAATCCATCATTATCCTCTCTTGTCTACTTTATTTCCTTCTCGTTCTCGTTATAGTACATGTTAATGTAGTAAACTCTCGTCTCGTGGCTTTAATTAGAAAGGAAAAAATTCTCAAAAAAAAAAAAAAAAAAACCAATGGAAAGAAAAAGAAACTCAAATGAAAAA...

XM_057916811.1
AATGGTGGAATATTTTGTTTGTTATCTTATTCATTACAATACTTGTACTTCTGAAGAAGCAATTGGGAAAGTTGATTTATCCGTCTCATTTGCTAAAGCTTATCACCTTTCATACTACAGTTCGATAACTAAAATTGTGTCTACTTGCACCTGTGGAAGGCTGCGACTTGTGAGGAGACTTTGCTCTGAGGATTTTGTCATTTTAAGAACTCATTATGTGCAACGTCTTTCCTCTTTACCGAGTACCGGTATGTGGGCAT...

CDS

2 records

下载 CDS FASTA

LOC130992258
ATGGCGTTGCTGTCAGAACAGGGTGCGGAAATCGTCATCCCGGTGTGCGCCGTCGTCGGCATCCTGTTCTCGCTCTTCCAGTGGTTCCTTGTCTCCAAAGTGAAGCTCTCGCCGGAGCGAGGCGGCGGAGCGCCGGCTGCCAGCAACGGTAAGAACGGGTACGCCGAGTACTTGATTGAGGAGGAGGAAGGCGTCAACGACCAAGACGTCGTCGCCAAGTGCGCCGAGATCCAGAACGCTATCTCCGAGGGTGCAACGTC...

LOC130992258
ATGGTTGCTTTTGCAATCCTCATTTTCCTCTTCTTGGGCTCTGTTGAGGGTTTCAGCACTGAGAGCCAGGCTTGCACTTATGACAAGGAGAAGCTGTGCAAGCCCGCCCTTGCAACTGCCCTGTTCAGCACTATATCCTTCTTGCTCGGTGCTATCACTTCTATCCTTTCTGGTTTCCTCGGGATGAAAATCGCAACCTATGCTAATGCAAGGACTACACTGGAAGCAAGAAAGGGTGTCGGGAAAGCTTTTATTGTTGC...

Protein

2 records

下载 Protein FASTA

XP_057772793.1
MALLSEQGAEIVIPVCAVVGILFSLFQWFLVSKVKLSPERGGGAPAASNGKNGYAEYLIEEEEGVNDQDVVAKCAEIQNAISEGATSFLFTEYRYVGIFMVAFAILIFLFLGSVEGFSTESQACTYDKEKLCKPALATALFSTISFLLGAITSILSGFLGMKIATYANARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLYIVINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVG...

XP_057772794.1
MVAFAILIFLFLGSVEGFSTESQACTYDKEKLCKPALATALFSTISFLLGAITSILSGFLGMKIATYANARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLYIVINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGMTHDFTAMTYPLLISSMGIVVCLITTLFATDFFEIKAVNEIEP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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