Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001090`

染色体: Chr07 坐标: 8023285-8026332 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001090`
名称	SmilChr07G001090
描述	uncharacterized SmilChr07G001090
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	8023285 - 8026332 / `-`

ID 对照

NCBI Gene ID	`LOC130992264`
GeneID	`130992264`
locus_tag	`-`
NCBI Name	`LOC130992264`
原始查询	`SmilChr07G001090`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os04g0644600; species=rice; confidence=high
产物	hit=Os04g0644600; species=rice; confidence=high
Arabidopsis	`AT1G52510` (AT1G52510) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841682] identity=75; qcov=1; evalue=1.35e-137; confidence=high
Rice	`Os04g0644600` - identity=77.5; qcov=1; evalue=8.42e-139; confidence=high
GO	GO:0003824 (catalytic activity); GO:0009507 (chloroplast)
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:130992264

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057772802.1`
2	Endoplasmic reticulum	内质网	1.00000	`XP_057772804.1`
3	Chloroplast stroma	叶绿体基质	0.60000	`XP_057772802.1`
4	Chloroplast thylakoid	类囊体	0.60000	`XP_057772802.1`
5	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057772804.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:8023485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr7:8023677`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr7:8024357`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B8,C53
`Chr7:8024968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr7:8025162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B8,C53
`Chr7:8025400`	`CCG`	`C`	2bp_deletion	frameshift_variant	1	B130
`Chr7:8025400`	`CCG`	`C`	2bp_deletion	CDS_variant	1	B130
`Chr7:8025401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B11,B17,B6,C21,C67
`Chr7:8025590`	`A`	`AGT`	2bp_insertion	frameshift_variant	5	A25,B29,B94,C11,C71
`Chr7:8025590`	`A`	`AGT`	2bp_insertion	CDS_variant	5	A25,B29,B94,C11,C71
`Chr7:8025594`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B94
`Chr7:8025594`	`AT`	`A`	1bp_deletion	CDS_variant	1	B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772802.1

367 aa

184

367

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

Abhydrolase_1

PF12146 Hydrolase_4 112-350 aa PF00561 Abhydrolase_1 114-224 aa PF12697 Abhydrolase_6 115-360 aa PF00561 Abhydrolase_1 285-354 aa

XP_057772804.1

236 aa

118

236

Abhydrolase_1

Abhydrolase_6

Abhydrolase_1

PF00561 Abhydrolase_1 5-93 aa PF12697 Abhydrolase_6 6-229 aa PF00561 Abhydrolase_1 154-223 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772802.1`	Pfam	`PF12146`	Hydrolase_4	Domain	112	350	4e-11	43.4	Serine aminopeptidase, S33
`XP_057772802.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	114	224	4.1e-25	89.6	alpha/beta hydrolase fold
`XP_057772802.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	115	360	1.5e-13	52.6	Alpha/beta hydrolase family
`XP_057772802.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	285	354	4.1e-25	89.6	alpha/beta hydrolase fold
`XP_057772804.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	5	93	3.7e-20	73.3	alpha/beta hydrolase fold
`XP_057772804.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	6	229	2.7e-09	38.7	Alpha/beta hydrolase family
`XP_057772804.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	154	223	3.7e-20	73.3	alpha/beta hydrolase fold

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916819.1
GAAAGCAGAGAGATTCAGTTGAGGATGAGTAGTTAGTGACTGCTGGAGGTCGTTAAAATTCCAAGTCCCTCCACCACTCGCCACACCTCTCCACCGCCGCAATGCCTTTCTCTCTCCTCTCTCATCCGCCTCTCATCTCCCCGCCCACTTCTACTTTCTTATCTAATAAATTATTCAATCAGAAACGATTCGCCCGTATAAGCGTGGAAGCTTCCAAAAACGACGATGACGAAACTGCTTTCAATCCGTTTGGGTTCGTC...

XM_057916821.1
CTGCTTTCAATCCGTTTGGGTTCGTCACCGATAATCCTTCCAGCCGCAGCGCCATTCAGCTACCGGAATCCCCTGCCGAGGACGGGAACGTCGGCCAAATGCTTTATGTAATTATTATTTAACATTTTAGAAAATAGAAGGCAAGGGAAAGGAATATGGCTCTTACATTAAGTCGGGAGGTTTTCGATGGTTTGTAAGAGAAACAGGATCGCGTGAAAGAGGGCGTGGAACCATCGTGTTTCTCCATGGTGCTCCAACAC...

CDS

2 records

下载 CDS FASTA

LOC130992264
ATGCCTTTCTCTCTCCTCTCTCATCCGCCTCTCATCTCCCCGCCCACTTCTACTTTCTTATCTAATAAATTATTCAATCAGAAACGATTCGCCCGTATAAGCGTGGAAGCTTCCAAAAACGACGATGACGAAACTGCTTTCAATCCGTTTGGGTTCGTCACCGATAATCCTTCCAGCCGCAGCGCCATTCAGCTACCGGAATCCCCTGCCGAGGACGGGAACGTCGGCCAAATGCTTTATAAAATAGAAGGCAAGGGAAA...

LOC130992264
ATGTCTCAGATGTCGGATGCTGGGTTTCACTGCCTTGCACCTGACTGGATAGGATTTGGTTTTAGTGACAAGCCACAGGCTGGATATGGATTTGACTACACAGAGGAAGAATTCCATGAAGTGTTTGACAAATTACTGGATACTCTTGGGCTTACTGATCCCTTTTACCTAGTAGTTCAGGGATTTGTTGTGGGATCGTATGGATTGACTTGGGCTTTGAAAAATCAAAGCAGAGTGTCAAAGCTTGCAATCCTGAACAC...

Protein

2 records

下载 Protein FASTA

XP_057772802.1
MPFSLLSHPPLISPPTSTFLSNKLFNQKRFARISVEASKNDDDETAFNPFGFVTDNPSSRSAIQLPESPAEDGNVGQMLYKIEGKGKEYGSYIKSGGFRWFVRETGSRERGRGTIVFLHGAPTQSYSYRVVMSQMSDAGFHCLAPDWIGFGFSDKPQAGYGFDYTEEEFHEVFDKLLDTLGLTDPFYLVVQGFVVGSYGLTWALKNQSRVSKLAILNTPLTTSSPLPGLFQQLRIPLLGEFTCQNAVMAERFIEAGSAYV...

XP_057772804.1
MSQMSDAGFHCLAPDWIGFGFSDKPQAGYGFDYTEEEFHEVFDKLLDTLGLTDPFYLVVQGFVVGSYGLTWALKNQSRVSKLAILNTPLTTSSPLPGLFQQLRIPLLGEFTCQNAVMAERFIEAGSAYVLKLEKADVYRLPYLSSSGPGFALLEATKRANFKDINSRVSAGFASGSWEKPILVAWGMSDKYLPQSVAEEFQKGNTDRVQLKVIEGAGHMPQEDWPEKVVGALRVFF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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