Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001099`

染色体: Chr07 坐标: 8114418-8116040 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001099`
名称	SmilChr07G001099
描述	uncharacterized SmilChr07G001099
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	8114418 - 8116040 / `-`

ID 对照

NCBI Gene ID	`LOC130992275`
GeneID	`130992275`
locus_tag	`-`
NCBI Name	`LOC130992275`
原始查询	`SmilChr07G001099`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	seed dormancy control protein [Source:NCBI gene (formerly Entrezgene);Acc:838101]; symbol=AT1G15320; hit=AT1G15320; species=arabidopsis; confidence=high
产物	seed dormancy control protein [Source:NCBI gene (formerly Entrezgene);Acc:838101]; symbol=AT1G15320; hit=AT1G15320; species=arabidopsis; confidence=high
Arabidopsis	`AT1G15320` (AT1G15320) seed dormancy control protein [Source:NCBI gene (formerly Entrezgene);Acc:838101] identity=48.4; qcov=0.788; evalue=4.78e-66; confidence=high
Rice	`Os09g0115900` - identity=35.8; qcov=0.611; evalue=9.48e-13; confidence=low
GO	GO:0006351 (DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF14144 (DOG1)
InterPro	-
eggNOG	-
NR	GeneID:130992275

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.40000	`XP_057772822.1`
2	Cytosol	细胞质基质	0.40000	`XP_057772822.1`
3	Nucleus	细胞核	0.20000	`XP_057772822.1`
4	Chloroplast	叶绿体	0.20000	`XP_057772822.1`
5	Chromosome	染色体	0.00000	`XP_057772822.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:8114808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr7:8114855`	`TG`	`T`	1bp_deletion	frameshift_variant	5	B25,B90,B92,C29,D8
`Chr7:8114855`	`TG`	`T`	1bp_deletion	CDS_variant	5	B25,B90,B92,C29,D8
`Chr7:8114858`	`TTG`	`T`	2bp_deletion	frameshift_variant	5	B25,B90,B92,C29,D8
`Chr7:8114858`	`TTG`	`T`	2bp_deletion	CDS_variant	5	B25,B90,B92,C29,D8
`Chr7:8114930`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B88
`Chr7:8114930`	`GC`	`G`	1bp_deletion	CDS_variant	1	B88
`Chr7:8114942`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:8114956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B3,C15
`Chr7:8115145`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B130,C33,C46
`Chr7:8115161`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,B140,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772822.1

283 aa

142

283

DOG1

PF14144 DOG1 77-145 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772822.1`	Pfam	`PF14144`	DOG1	Family	77	145	2.5e-12	47.5	Seed dormancy control

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916839.1
ATTTATCTTGAGATAGTTTAATTAAGTAGTGAGCGTCACTGATTCTAGTAATATAAGAAATTAAGAATGCTATATCATTTAAGATAAAAAGACTAAAAGAAAGTAAGAATGTAACAGGATAGAAAAAAATAGTTATAAAATTTGATATTTTGAGTGTAAACAAAATAAAATATACTAGTATAAATTTTAGAAGTGTTTAGCATATAGCAAAGAATTGAGGAGGGGAAAAATACAAGGCCAGTTTTTGGGAGAGAGCTGGC...

CDS

1 records

下载 CDS FASTA

LOC130992275
ATGAGGAGAACTGCGTCTCAACCCCTGCTGAGGCATTTTCTTGAAGATGAGGAATTTGAAGATGAAGTTTTGAGGGCCGAACCCAAACCTTTCAGAGATGTTGATCCTCTAACCAGACAACTCTCCTGCATCTCCATCCCTAAAAGAGATTCCAAGAAAACTTGTGAAGAGTTATCCTGCGGAGCGTGGAGGCAAGAGCAGAGGAGTGGAGCCGCAAAGCTCAAGAAACAGCTCAAGGCAAGATGGGCCATTCAGAAGCT...

Protein

1 records

下载 Protein FASTA

XP_057772822.1
MRRTASQPLLRHFLEDEEFEDEVLRAEPKPFRDVDPLTRQLSCISIPKRDSKKTCEELSCGAWRQEQRSGAAKLKKQLKARWAIQKLIDEQLGRLKAHYGRAMGPTKMSDVADLLMPKWAPPHEVAAVFWLGDWRPSTVLELLRSIARSLDVWDPVAVERALSQLINDMRSEEAVIDEEITELHSNCVLHLPFGPAHNHTNWPALAHVRSELRKVHRVIVKAQNLRIKALEFVVKKVLSQSDAAEFLVAFMGIQDVINEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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