Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001100`

染色体: Chr07 坐标: 8116164-8119408 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001100`
名称	SmilChr07G001100
描述	E3 ubiquitin-protein ligase KEG-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	8116164 - 8119408 / `-`

ID 对照

NCBI Gene ID	`LOC130992273`
GeneID	`130992273`
locus_tag	`-`
NCBI Name	`LOC130992273`
原始查询	`SmilChr07G001100`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase KEG-like
产物	E3 ubiquitin-protein ligase KEG-like
Arabidopsis	`AT4G32250` (AT4G32250) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829358] identity=51.1; qcov=0.91; evalue=0; confidence=high
Rice	`Os06g0639500` - identity=53.2; qcov=0.994; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130992273

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.40000	`XP_057772819.1`
2	Cell membrane	细胞膜	0.40000	`XP_057772819.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057772819.1`
4	Nucleus	细胞核	0.00000	`XP_057772819.1`
5	Chromosome	染色体	0.00000	`XP_057772819.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:8116476`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,D4
`Chr7:8116596`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr7:8116701`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr7:8116714`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:8116829`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr7:8116951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C33,C46
`Chr7:8117264`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr7:8117266`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:8117381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B3,C14,C15,C73,C85
`Chr7:8117452`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:8117462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr7:8117604`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772819.1

630 aa

315

630

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 42-307 aa PF00069 Pkinase 45-306 aa

XP_057772820.1

630 aa

315

630

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 42-307 aa PF00069 Pkinase 45-306 aa

XP_057772821.1

630 aa

315

630

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 42-307 aa PF00069 Pkinase 45-306 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772819.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	42	307	9.2e-25	88.1	Protein tyrosine and serine/threonine kinase
`XP_057772819.1`	Pfam	`PF00069`	Pkinase	Domain	45	306	1.2e-22	81.3	Protein kinase domain
`XP_057772820.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	42	307	9.2e-25	88.1	Protein tyrosine and serine/threonine kinase
`XP_057772820.1`	Pfam	`PF00069`	Pkinase	Domain	45	306	1.2e-22	81.3	Protein kinase domain
`XP_057772821.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	42	307	9.2e-25	88.1	Protein tyrosine and serine/threonine kinase
`XP_057772821.1`	Pfam	`PF00069`	Pkinase	Domain	45	306	1.2e-22	81.3	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057916838.1
ACAAAAGTGAGAATATTGTAGTAGTATTTTTTTTTTCTTAGAAGTTGAGGGTTCTCATATAGAAGAAAAAATGGTCCACAGTTGTCGGTGTTCACTTGACGGTGAGGGGGAATGGCTGAACAAATTTCACCGGTAGTCCATTTTGATTTTGAACTTTATGATGGAGATCCTGATCAGTTAAGAACTGTTGACGCTACTCCTGCGCTGCCCAACTCATATATTGATCCTGCATCATTGAAACTCAAATACAGGATTGGCCA...

XM_057916837.1
GGTCCACAGTTGTCGGTGTTCACTTGACGGGTACGCCTCACTGACTGCGACTGCTTCTTCTTCTTCTTCTTCCTCTTCCCCACTTCTCTCTCTTGAGGGGGAATGGCTGAACAAATTTCACCGGTAGTCCATTTTGATTTTGAACTTTATGATGGAGATCCTGATCAGTTAAGAACTGTTGACGCTACTCCTGCGCTGCCCAACTCATATATTGATCCTGCATCATTGAAACTCAAATACAGGATTGGCCACGGACTGTT...

CDS

3 records

下载 CDS FASTA

LOC130992273
ATGGCTGAACAAATTTCACCGGTAGTCCATTTTGATTTTGAACTTTATGATGGAGATCCTGATCAGTTAAGAACTGTTGACGCTACTCCTGCGCTGCCCAACTCATATATTGATCCTGCATCATTGAAACTCAAATACAGGATTGGCCACGGACTGTTTGGTGATGTTTGGGTAGCCACACATCATCAATCAGGAACAGACTATGATCAGTATCATGAAGTTGTGGTTAAGATGTTGCATTCAATAAAGGAGGGTCACGA...

Protein

3 records

下载 Protein FASTA

XP_057772819.1
MAEQISPVVHFDFELYDGDPDQLRTVDATPALPNSYIDPASLKLKYRIGHGLFGDVWVATHHQSGTDYDQYHEVVVKMLHSIKEGHEKEFLHRFEELWRNSKSKKLQGVCWLHGISIISGKICIALKSYEGSIGDRMAQMNGGKLSLADVLRYGIELAKDIQQLHQIGLLVLNLKPNNFLLDERDHVVLGDFGIPYLLLGIPWRDPQVAVRLGTLNYMAPEQWRPGVRGPISYETDSWGFGCSIIEMLTGSPPWLGRSPE...

XP_057772820.1
MAEQISPVVHFDFELYDGDPDQLRTVDATPALPNSYIDPASLKLKYRIGHGLFGDVWVATHHQSGTDYDQYHEVVVKMLHSIKEGHEKEFLHRFEELWRNSKSKKLQGVCWLHGISIISGKICIALKSYEGSIGDRMAQMNGGKLSLADVLRYGIELAKDIQQLHQIGLLVLNLKPNNFLLDERDHVVLGDFGIPYLLLGIPWRDPQVAVRLGTLNYMAPEQWRPGVRGPISYETDSWGFGCSIIEMLTGSPPWLGRSPE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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