当前解析结果
SmilChr07G001119| 统一新 Gene ID | SmilChr07G001119 |
|---|---|
| 名称 | SmilChr07G001119 |
| 描述 | uncharacterized SmilChr07G001119 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 8292733 - 8294079 / - |
| NCBI Gene ID | LOC130992292 |
|---|---|
| GeneID | 130992292 |
| locus_tag | - |
| NCBI Name | LOC130992292 |
| 原始查询 | SmilChr07G001119 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832142]; symbol=AT5G20190; hit=AT5G20190; species=arabidopsis; confidence=medium |
| 产物 | Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832142]; symbol=AT5G20190; hit=AT5G20190; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G20190 (AT5G20190)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832142] identity=39.5; qcov=0.989; evalue=4.71e-52; confidence=medium |
| Rice | Os06g0606700 (P0029C06.12)- identity=55.6; qcov=0.528; evalue=9.6e-49; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992292 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057772842.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057772842.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057772842.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772842.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772842.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:8293237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B110,B72,C14 |
Chr7:8293321 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:8293337 |
TG |
T |
1bp_deletion | frameshift_variant | 7 | A5,A8,B25,B28,C45,C46,D1 |
Chr7:8293343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B110,C14 |
Chr7:8293376 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | B80,C62 |
Chr7:8293376 |
C |
CT |
1bp_insertion | CDS_variant | 2 | B80,C62 |
Chr7:8293571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B110,B72,C14 |
Chr7:8293576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,C87 |
Chr7:8293586 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B135,B94,C63 |
Chr7:8293623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:8293640 |
C |
CG |
1bp_insertion | frameshift_variant | 7 | B134,B53,B77,B97,C28,C42,C82 |
Chr7:8293726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A6,B49,B61 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。