Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001123`

染色体: Chr07 坐标: 8357823-8362146 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001123`
名称	SmilChr07G001123
描述	phospholipase D alpha 1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	8357823 - 8362146 / `-`

ID 对照

NCBI Gene ID	`LOC130992295`
GeneID	`130992295`
locus_tag	`-`
NCBI Name	`LOC130992295`
原始查询	`SmilChr07G001123`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phospholipase D alpha 1
产物	phospholipase D alpha 1
Arabidopsis	`AT3G15730` (PLDALPHA1) phospholipase D alpha 1 [Source:NCBI gene (formerly Entrezgene);Acc:820816] identity=77.4; qcov=1; evalue=0; confidence=high
Rice	`Os01g0172400` (OsPLDalpha1) - identity=75.9; qcov=1.01; evalue=0; confidence=high
GO	GO:0004630 (D-type glycerophospholipase activity); GO:0005509 (calcium ion binding); GO:0005886 (plasma membrane); GO:0009395 (phospholipid catabolic process); GO:0046470 (phosphatidylcholine metabolic process)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00168 (C2); PF00614 (PLDc); PF13091 (PLDc_2)
InterPro	-
eggNOG	-
NR	GeneID:130992295

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057772847.1`
2	Endocytic vesicle	Endocytic vesicle	0.60000	`XP_057772846.1`
3	Cytosol	细胞质基质	0.60000	`XP_057772846.1`
4	Clathrin-coated vesicle	Clathrin-coated vesicle	0.60000	`XP_057772847.1`
5	Endosome	内体	0.60000	`XP_057772847.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:8358304`	`CG`	`C`	1bp_deletion	frameshift_variant	1	B131
`Chr7:8358304`	`CG`	`C`	1bp_deletion	CDS_variant	1	B131
`Chr7:8358374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,B115,B12
`Chr7:8358409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B38,B39,C17,C37,C60
`Chr7:8358645`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr7:8358821`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B110,B12,B55,C14
`Chr7:8358971`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B101,B48,B68,B71
`Chr7:8359013`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C33,C46
`Chr7:8359043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr7:8359150`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B73
`Chr7:8359150`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr7:8359397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772846.1

840 aa

420

840

PLDc

PF00168 C2 40-126 aa PF00614 PLDc 217-664 aa PF00614 PLDc 696-828 aa

XP_057772847.1

808 aa

404

808

PLDc

PLDc_2

PF00168 C2 40-126 aa PF00614 PLDc 217-796 aa PF13091 PLDc_2 654-688 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772846.1`	Pfam	`PF00168`	C2	Domain	40	126	1.1e-11	45.6	C2 domain
`XP_057772846.1`	Pfam	`PF00614`	PLDc	Domain	217	664	1.7e-224	747.1	Phospholipase D
`XP_057772846.1`	Pfam	`PF00614`	PLDc	Domain	696	828	1.7e-224	747.1	Phospholipase D
`XP_057772847.1`	Pfam	`PF00168`	C2	Domain	40	126	7.9e-12	46.0	C2 domain
`XP_057772847.1`	Pfam	`PF00614`	PLDc	Domain	217	796	1.5e-231	770.3	Phospholipase D
`XP_057772847.1`	Pfam	`PF13091`	PLDc_2	Domain	654	688	4e-09	37.1	Cardiolipin synthase, PLD-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916864.1
CACTCCTTTTCTCTTATATTTAATCAGTCCACCGCGTTCATTACATAAAGGCGATTTTCTCGCTCTTCTCACTCACTCTCTCTCCCCTCTTCCATTTACCATTCTTGACACTTTGAAGATCGGATCACATTTCTTGAAAACTTCAGAAATCTTTCTCACTTTGTGAAAATCAATGGCGCAGCTCTTGCTTCATGGAACTCTCCATGTCAAGATCTATAAAGTGGACAAACTGAAAGTTGGAGGGGGTGGGAATCTCTTCA...

XM_057916863.1
CTTTTCTCTTATATTTAATCAGTCCACCGCGTTCATTACATAAAGGCGATTTTCTCGCTCTTCTCACTCACTCTCTCTCCCCTCTTCCATTTACCATTCTTGACACTTTGAAGATCGGATCACATTTCTTGAAAACTTCAGAAATCTTTCTCACTTTGTGAAAATCAATGGCGCAGCTCTTGCTTCATGGAACTCTCCATGTCAAGATCTATAAAGTGGACAAACTGAAAGTTGGAGGGGGTGGGAATCTCTTCAGCAAG...

CDS

2 records

下载 CDS FASTA

LOC130992295
ATGGCGCAGCTCTTGCTTCATGGAACTCTCCATGTCAAGATCTATAAAGTGGACAAACTGAAAGTTGGAGGGGGTGGGAATCTCTTCAGCAAGTTTGTGGAGAACATTCAGGAGAAAGTTGGGTTCGGCGAAGGAACTCCCAAAATCTATGCATCTATTGATTTAGAAAAGGCTAGAGTTGGGAGAACAAGAATGATTGAAGAGAACCCCAACAATCCTGAGTGGAATGAGTCTTTTCACATTTACTGTGCACATATGGC...

Protein

2 records

下载 Protein FASTA

XP_057772846.1
MAQLLLHGTLHVKIYKVDKLKVGGGGNLFSKFVENIQEKVGFGEGTPKIYASIDLEKARVGRTRMIEENPNNPEWNESFHIYCAHMASNVIFTVKDDNPIGATLIGRAYVPVHELLDGEEIDRWVEILDEDKNPINEESKIHVSLQFFEVKRDRNWARGIKSPKYPGVPYTFFPQRRGCRVSLYQDAHVPDGFIPKIPLSGGQYYEPQRCWEDMFDAITNAKHFIYITGWSVYTEITMIRDSRRPKPGGDTTLGELLKQK...

XP_057772847.1
MAQLLLHGTLHVKIYKVDKLKVGGGGNLFSKFVENIQEKVGFGEGTPKIYASIDLEKARVGRTRMIEENPNNPEWNESFHIYCAHMASNVIFTVKDDNPIGATLIGRAYVPVHELLDGEEIDRWVEILDEDKNPINEESKIHVSLQFFEVKRDRNWARGIKSPKYPGVPYTFFPQRRGCRVSLYQDAHVPDGFIPKIPLSGGQYYEPQRCWEDMFDAITNAKHFIYITGWSVYTEITMIRDSRRPKPGGDTTLGELLKQK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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