当前解析结果
SmilChr07G001124| 统一新 Gene ID | SmilChr07G001124 |
|---|---|
| 名称 | SmilChr07G001124 |
| 描述 | uncharacterized SmilChr07G001124 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 8385006 - 8385874 / + |
| NCBI Gene ID | LOC130993778 |
|---|---|
| GeneID | 130993778 |
| locus_tag | - |
| NCBI Name | LOC130993778 |
| 原始查询 | SmilChr07G001124 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0643433; species=rice; confidence=medium |
| 产物 | hit=Os03g0643433; species=rice; confidence=medium |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=31.6; qcov=0.628; evalue=2.51e-19; confidence=low |
| Rice | Os03g0643433- identity=35; qcov=0.802; evalue=1.39e-31; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993778 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057774799.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057774799.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057774799.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774799.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774799.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:8385013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B126,B135,B136,B139,C14 |
Chr7:8385017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B76,C27 |
Chr7:8385057 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:8385103 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C49,D3 |
Chr7:8385114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr7:8385132 |
TA |
T |
1bp_deletion | frameshift_variant | 4 | B121,B137,B66,C82 |
Chr7:8385132 |
TA |
T |
1bp_deletion | CDS_variant | 4 | B121,B137,B66,C82 |
Chr7:8385165 |
G |
GA |
1bp_insertion | frameshift_variant | 4 | B121,B137,B66,C82 |
Chr7:8385165 |
G |
GA |
1bp_insertion | CDS_variant | 4 | B121,B137,B66,C82 |
Chr7:8385172 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B44,B48,C49 |
Chr7:8385178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr7:8385182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B104,C33,C46,C83 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。