Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001137

染色体: Chr07 坐标: 8530727-8533687 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001137
名称SmilChr07G001137
描述O-fucosyltransferase 13
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向8530727 - 8533687 / -

ID 对照

NCBI Gene IDLOC130992309
GeneID130992309
locus_tag-
NCBI NameLOC130992309
原始查询SmilChr07G001137

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述O-fucosyltransferase 13
产物O-fucosyltransferase 13
ArabidopsisAT1G52630 (AT1G52630)
O-fucosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:841695]
identity=77.2; qcov=1; evalue=0; confidence=high
RiceOs08g0537900 (DERF7)
-
identity=72; qcov=1.01; evalue=0; confidence=high
GOGO:0005737 (cytoplasm)
KEGG-
PfamPF10250 (O-FucT)
InterPro-
eggNOG-
NRGeneID:130992309

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057772862.1
2 Golgi stack 高尔基堆 0.20000 XP_057772862.1
3 Nucleus 细胞核 0.00000 XP_057772863.1
4 Chromosome 染色体 0.00000 XP_057772863.1
5 Centromere 着丝粒 0.00000 XP_057772863.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:8531147 G A EMS_canonical_SNV CDS_variant 1 B104
Chr7:8532529 C T EMS_canonical_SNV CDS_variant 2 B12,B55
Chr7:8533129 G A EMS_canonical_SNV CDS_variant 1 B104
Chr7:8533299 G A EMS_canonical_SNV CDS_variant 3 B78,B82,C4
Chr7:8533312 C T EMS_canonical_SNV CDS_variant 5 B130,B14,C33,C46,C53
Chr7:8533380 C T EMS_canonical_SNV CDS_variant 1 B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057772862.1
440 aa
N
1
220
440
O-FucT
C
PF10250 O-FucT 78-384 aa
XP_057772863.1
351 aa
N
1
176
351
O-FucT
C
PF10250 O-FucT 1-295 aa
XP_057772864.1
351 aa
N
1
176
351
O-FucT
C
PF10250 O-FucT 1-295 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772862.1 Pfam PF10250 O-FucT Family 78 384 1.1e-62 213.5 GDP-fucose protein O-fucosyltransferase
XP_057772863.1 Pfam PF10250 O-FucT Family 1 295 1.2e-56 193.6 GDP-fucose protein O-fucosyltransferase
XP_057772864.1 Pfam PF10250 O-FucT Family 1 295 1.2e-56 193.6 GDP-fucose protein O-fucosyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057916879.1
TAAGTAGCTTAACTAGTTCTAAATTTGTTTGGGGGAAAAAAAGATAAAATTGTAAACATTTGATTAGTTTTATTTGAACATTGCTAATAGTAACTTTATTACTACTATAAGGATAAAAAGAAAAAAATAAAATTAAAGAACAGAATGCGATCTGAAATTTGTGGTTTCATTCCACAGTGAAGAAGTTTATAGATCGATTCTAAAAAAAAAGAAGTTTACAGATCCGTTCTTCTTCTCTCAAACACGAATTAAGACGGTGG...
XM_057916880.1
TAAGGATAAAAAGAAAAAAATAAAATTAAAGAACAGAATGCGATCTGAAATTTGTGGTTTCATTCCACAGTGAAGAAGTTTATAGATCGATTCTAAAAAAAAAGAAGTTTACAGATCCGTTCTTCTTCTCTCAAACACGAATTAAGACGGTGGCTTCAATGATTGCTCCGACGGTAGGGAAAACCCTACTCGCATCAGCAGTTATTTTTGTCTCTGTTGCTCTAGCCCTAATTTTGTTCTCGCCTTCCTTCCAATTTTCT...

CDS

3 records

下载 CDS FASTA
LOC130992309
ATGATTGCTCCGACGGTAGGGAAAACCCTACTCGCATCAGCAGTTATTTTTGTCTCTGTTGCTCTAGCCCTAATTTTGTTCTCGCCTTCCTTCCAATTTTCTCAAACGTTGCCCATTTCTCCGCCGTCAGAACGAGCTGAGATTTGGAGTTTGAGGAGATTAATCGAATGGCGGCCTTGTAATTGGTGGCTTCAAGGCCATCTTGCGGCTCTGCCAGAAAAGAGCAATGGGTATATTCGCATTGATTGCTATGGTGGGCT...
LOC130992309
ATGAGGAGGGATTTCTGTGATGGTGTTGGTATTGCTCGCTTGCTGAATGCCACTCTTGTTTTACCAAAATTTGAGGTTGCTGCATATTGGAATGAATCTAGTGGATTCGGAGATGTATTTGATGTGGATTACTTCATCCAAAAAATGAACGGATTTGTTCAGGTAGTAAAAGAGTTGCCTGTGGAACTTGTATCAAAAGAGCCTTTTCGAGTTGATTGTAGCAAGCGTAAAGGCTTATTTGATTATGTAGAAACTGTACT...

Protein

3 records

下载 Protein FASTA
XP_057772862.1
MIAPTVGKTLLASAVIFVSVALALILFSPSFQFSQTLPISPPSERAEIWSLRRLIEWRPCNWWLQGHLAALPEKSNGYIRIDCYGGLNQMRRDFCDGVGIARLLNATLVLPKFEVAAYWNESSGFGDVFDVDYFIQKMNGFVQVVKELPVELVSKEPFRVDCSKRKGLFDYVETVLPSLLEHHYISITPAMSQRRDRYPLSAKAALCQACYSALQLTEKLEKKGFELLGAIPKPFLALHLRFEPDMVAYSQCEYSSLSPA...
XP_057772863.1
MRRDFCDGVGIARLLNATLVLPKFEVAAYWNESSGFGDVFDVDYFIQKMNGFVQVVKELPVELVSKEPFRVDCSKRKGLFDYVETVLPSLLEHHYISITPAMSQRRDRYPLSAKAALCQACYSALQLTEKLEKKGFELLGAIPKPFLALHLRFEPDMVAYSQCEYSSLSPASVQAIEAARGDRKPWTGEQARLWRSRGKCPLTPNETTIILQALSIPTDTNIYLAAGDGLMELEGLTSVYANVYTKSSLLDGDDFRNMHG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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