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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001138

染色体: Chr07 坐标: 8535144-8538286 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001138
名称SmilChr07G001138
描述pentatricopeptide repeat-containing protein At1g52640, mitochondrial
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向8535144 - 8538286 / -

ID 对照

NCBI Gene IDLOC130992311
GeneID130992311
locus_tag-
NCBI NameLOC130992311
原始查询SmilChr07G001138

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g52640, mitochondrial
产物pentatricopeptide repeat-containing protein At1g52640%2C mitochondrial
ArabidopsisAT1G52640 (AT1G52640)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841696]
identity=59; qcov=0.954; evalue=0; confidence=high
RiceOs01g0505500
-
identity=32.6; qcov=0.8; evalue=6.23e-82; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130992311

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057772867.1
2 Nucleus 细胞核 0.00000 XP_057772867.1
3 Chromosome 染色体 0.00000 XP_057772867.1
4 Centromere 着丝粒 0.00000 XP_057772867.1
5 Chromatin 染色质 0.00000 XP_057772867.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:8536678 C T EMS_canonical_SNV CDS_variant 1 C15
Chr7:8536687 C T EMS_canonical_SNV CDS_variant 1 C77
Chr7:8536789 C T EMS_canonical_SNV CDS_variant 4 B130,C33,C46,C53
Chr7:8536873 C T EMS_canonical_SNV CDS_variant 1 C77
Chr7:8536953 C T EMS_canonical_SNV CDS_variant 4 A15,B136,B32,B35
Chr7:8537113 C T EMS_canonical_SNV CDS_variant 2 B53,C62
Chr7:8537158 G A EMS_canonical_SNV CDS_variant 4 B12,B130,B55,C27
Chr7:8537162 G A EMS_canonical_SNV CDS_variant 1 D11
Chr7:8537299 G A EMS_canonical_SNV CDS_variant 5 B111,C25,C30,C7,C84
Chr7:8537357 C T EMS_canonical_SNV CDS_variant 1 C5
Chr7:8537372 G A EMS_canonical_SNV CDS_variant 2 C33,C46
Chr7:8537803 C T EMS_canonical_SNV CDS_variant 1 B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772867.1
521 aa
N
1
260
521
PPR
PPR_long
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR_1
PPR
C
PF01535 PPR 145-170 aa PF17177 PPR_long 188-308 aa PF01535 PPR 212-241 aa PF13812 PPR_3 231-291 aa PF12854 PPR_1 239-272 aa PF13041 PPR_2 244-292 aa PF01535 PPR 247-276 aa PF23276 TPR_24 250-371 aa PF13812 PPR_3 267-325 aa PF12854 PPR_1 274-307 aa PF01535 PPR 281-310 aa PF13041 PPR_2 286-323 aa PF17177 PPR_long 296-425 aa PF13812 PPR_3 301-360 aa PF12854 PPR_1 311-341 aa PF13041 PPR_2 314-357 aa PF01535 PPR 316-345 aa PF13812 PPR_3 337-395 aa PF13041 PPR_2 348-396 aa PF01535 PPR 352-381 aa PF01535 PPR 387-416 aa PF13041 PPR_2 387-432 aa PF12854 PPR_1 414-447 aa PF01535 PPR 421-452 aa
XP_057772868.1
521 aa
N
1
260
521
PPR
PPR_long
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR_1
PPR
C
PF01535 PPR 145-170 aa PF17177 PPR_long 188-308 aa PF01535 PPR 212-241 aa PF13812 PPR_3 231-291 aa PF12854 PPR_1 239-272 aa PF13041 PPR_2 244-292 aa PF01535 PPR 247-276 aa PF23276 TPR_24 250-371 aa PF13812 PPR_3 267-325 aa PF12854 PPR_1 274-307 aa PF01535 PPR 281-310 aa PF13041 PPR_2 286-323 aa PF17177 PPR_long 296-425 aa PF13812 PPR_3 301-360 aa PF12854 PPR_1 311-341 aa PF13041 PPR_2 314-357 aa PF01535 PPR 316-345 aa PF13812 PPR_3 337-395 aa PF13041 PPR_2 348-396 aa PF01535 PPR 352-381 aa PF01535 PPR 387-416 aa PF13041 PPR_2 387-432 aa PF12854 PPR_1 414-447 aa PF01535 PPR 421-452 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772867.1 Pfam PF01535 PPR Repeat 145 170 7.1e-52 170.8 PPR repeat
XP_057772867.1 Pfam PF17177 PPR_long Repeat 188 308 2.2e-23 83.5 Pentacotripeptide-repeat region of PRORP
XP_057772867.1 Pfam PF01535 PPR Repeat 212 241 7.1e-52 170.8 PPR repeat
XP_057772867.1 Pfam PF13812 PPR_3 Repeat 231 291 1.9e-40 137.5 Pentatricopeptide repeat domain
XP_057772867.1 Pfam PF12854 PPR_1 Repeat 239 272 1.1e-55 185.7 PPR repeat
XP_057772867.1 Pfam PF13041 PPR_2 Repeat 244 292 1e-74 247.1 PPR repeat family
XP_057772867.1 Pfam PF01535 PPR Repeat 247 276 7.1e-52 170.8 PPR repeat
XP_057772867.1 Pfam PF23276 TPR_24 Repeat 250 371 1.8e-22 80.4 Pentatricopeptide repeat-containing protein
XP_057772867.1 Pfam PF13812 PPR_3 Repeat 267 325 1.9e-40 137.5 Pentatricopeptide repeat domain
XP_057772867.1 Pfam PF12854 PPR_1 Repeat 274 307 1.1e-55 185.7 PPR repeat
XP_057772867.1 Pfam PF01535 PPR Repeat 281 310 7.1e-52 170.8 PPR repeat
XP_057772867.1 Pfam PF13041 PPR_2 Repeat 286 323 1e-74 247.1 PPR repeat family
XP_057772867.1 Pfam PF17177 PPR_long Repeat 296 425 2.2e-23 83.5 Pentacotripeptide-repeat region of PRORP
XP_057772867.1 Pfam PF13812 PPR_3 Repeat 301 360 1.9e-40 137.5 Pentatricopeptide repeat domain
XP_057772867.1 Pfam PF12854 PPR_1 Repeat 311 341 1.1e-55 185.7 PPR repeat
XP_057772867.1 Pfam PF13041 PPR_2 Repeat 314 357 1e-74 247.1 PPR repeat family
XP_057772867.1 Pfam PF01535 PPR Repeat 316 345 7.1e-52 170.8 PPR repeat
XP_057772867.1 Pfam PF13812 PPR_3 Repeat 337 395 1.9e-40 137.5 Pentatricopeptide repeat domain
XP_057772867.1 Pfam PF13041 PPR_2 Repeat 348 396 1e-74 247.1 PPR repeat family
XP_057772867.1 Pfam PF01535 PPR Repeat 352 381 7.1e-52 170.8 PPR repeat
XP_057772867.1 Pfam PF01535 PPR Repeat 387 416 7.1e-52 170.8 PPR repeat
XP_057772867.1 Pfam PF13041 PPR_2 Repeat 387 432 1e-74 247.1 PPR repeat family
XP_057772867.1 Pfam PF12854 PPR_1 Repeat 414 447 1.1e-55 185.7 PPR repeat
XP_057772867.1 Pfam PF01535 PPR Repeat 421 452 7.1e-52 170.8 PPR repeat
XP_057772868.1 Pfam PF01535 PPR Repeat 145 170 7.1e-52 170.8 PPR repeat
XP_057772868.1 Pfam PF17177 PPR_long Repeat 188 308 2.2e-23 83.5 Pentacotripeptide-repeat region of PRORP
XP_057772868.1 Pfam PF01535 PPR Repeat 212 241 7.1e-52 170.8 PPR repeat
XP_057772868.1 Pfam PF13812 PPR_3 Repeat 231 291 1.9e-40 137.5 Pentatricopeptide repeat domain
XP_057772868.1 Pfam PF12854 PPR_1 Repeat 239 272 1.1e-55 185.7 PPR repeat
XP_057772868.1 Pfam PF13041 PPR_2 Repeat 244 292 1e-74 247.1 PPR repeat family
XP_057772868.1 Pfam PF01535 PPR Repeat 247 276 7.1e-52 170.8 PPR repeat
XP_057772868.1 Pfam PF23276 TPR_24 Repeat 250 371 1.8e-22 80.4 Pentatricopeptide repeat-containing protein
XP_057772868.1 Pfam PF13812 PPR_3 Repeat 267 325 1.9e-40 137.5 Pentatricopeptide repeat domain
XP_057772868.1 Pfam PF12854 PPR_1 Repeat 274 307 1.1e-55 185.7 PPR repeat
XP_057772868.1 Pfam PF01535 PPR Repeat 281 310 7.1e-52 170.8 PPR repeat
XP_057772868.1 Pfam PF13041 PPR_2 Repeat 286 323 1e-74 247.1 PPR repeat family
XP_057772868.1 Pfam PF17177 PPR_long Repeat 296 425 2.2e-23 83.5 Pentacotripeptide-repeat region of PRORP
XP_057772868.1 Pfam PF13812 PPR_3 Repeat 301 360 1.9e-40 137.5 Pentatricopeptide repeat domain
XP_057772868.1 Pfam PF12854 PPR_1 Repeat 311 341 1.1e-55 185.7 PPR repeat
XP_057772868.1 Pfam PF13041 PPR_2 Repeat 314 357 1e-74 247.1 PPR repeat family
XP_057772868.1 Pfam PF01535 PPR Repeat 316 345 7.1e-52 170.8 PPR repeat
XP_057772868.1 Pfam PF13812 PPR_3 Repeat 337 395 1.9e-40 137.5 Pentatricopeptide repeat domain
XP_057772868.1 Pfam PF13041 PPR_2 Repeat 348 396 1e-74 247.1 PPR repeat family
XP_057772868.1 Pfam PF01535 PPR Repeat 352 381 7.1e-52 170.8 PPR repeat
XP_057772868.1 Pfam PF01535 PPR Repeat 387 416 7.1e-52 170.8 PPR repeat
XP_057772868.1 Pfam PF13041 PPR_2 Repeat 387 432 1e-74 247.1 PPR repeat family
XP_057772868.1 Pfam PF12854 PPR_1 Repeat 414 447 1.1e-55 185.7 PPR repeat
XP_057772868.1 Pfam PF01535 PPR Repeat 421 452 7.1e-52 170.8 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057916885.1
CTGCTAAAGCAAAAGTGAGATGAATGGAACCCAACTTCAATTTACAAATCACAATCGTTAGCTTGGAAAATCTTACCTCTCTGCCTGCTTGTTTCATCTCACTATCACGCTCTGCATCGCATCAATGGCGCTCAGATCACTCACCCGCTGTCTCTCCTCTCTCTACAATCCCACAACAGTCGAGCATTTCTCACTTCACTCAATCGCCCTTCAATCCCACCAAACACATCCATCCCTCGTCAACGATCTCTCGCGCATTC...
XM_057916884.1
CTGCTAAAGCAAAAGTGAGATGAATGGAACCCAACTTCAATTTACAAATCACAATCGTTAGCTTGGAAAATCTTACCTCTCTGCCTGCTTGTTTCATCTCACTATCACGCTCTGCATCGCATCAATGGCGCTCAGATCACTCACCCGCTGTCTCTCCTCTCTCTACAATCCCACAACAGTCGAGCATTTCTCACTTCACTCAATCGCCCTTCAATCCCACCAAACACATCCATCCCTCGTCAACGATCTCTCGCGCATTC...

CDS

2 records

下载 CDS FASTA
LOC130992311
ATGGCGCTCAGATCACTCACCCGCTGTCTCTCCTCTCTCTACAATCCCACAACAGTCGAGCATTTCTCACTTCACTCAATCGCCCTTCAATCCCACCAAACACATCCATCCCTCGTCAACGATCTCTCGCGCATTCTCAGCGACTACAGAGAGCCGCAGCACGACCTCGAATCAGCGCTCGCTCCCTTCACACCGCAGATTTCCACTTATTTAGTCGAACAAGTCTTGAAACGCTGCAGCAATCTCGGTTTCTCAGCTCA...
LOC130992311
ATGGCGCTCAGATCACTCACCCGCTGTCTCTCCTCTCTCTACAATCCCACAACAGTCGAGCATTTCTCACTTCACTCAATCGCCCTTCAATCCCACCAAACACATCCATCCCTCGTCAACGATCTCTCGCGCATTCTCAGCGACTACAGAGAGCCGCAGCACGACCTCGAATCAGCGCTCGCTCCCTTCACACCGCAGATTTCCACTTATTTAGTCGAACAAGTCTTGAAACGCTGCAGCAATCTCGGTTTCTCAGCTCA...

Protein

2 records

下载 Protein FASTA
XP_057772867.1
MALRSLTRCLSSLYNPTTVEHFSLHSIALQSHQTHPSLVNDLSRILSDYREPQHDLESALAPFTPQISTYLVEQVLKRCSNLGFSAQRLFRWAQEIPGFQHSKDSYHILVDILGSSREFPFLWDFLTEMKSTESCEITREIFWIVFRAYSRANLPRDAIRAFNKMLDFGIRPCLDDLDQLLFALCKRKHVKYAQELFDHVKGDDELNPSVKTYSILMRGWGEIGECGHVQKLFDEMLERGCAADLLAWNSVLDALCKGGK...
XP_057772868.1
MALRSLTRCLSSLYNPTTVEHFSLHSIALQSHQTHPSLVNDLSRILSDYREPQHDLESALAPFTPQISTYLVEQVLKRCSNLGFSAQRLFRWAQEIPGFQHSKDSYHILVDILGSSREFPFLWDFLTEMKSTESCEITREIFWIVFRAYSRANLPRDAIRAFNKMLDFGIRPCLDDLDQLLFALCKRKHVKYAQELFDHVKGDDELNPSVKTYSILMRGWGEIGECGHVQKLFDEMLERGCAADLLAWNSVLDALCKGGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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