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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001140

染色体: Chr07 坐标: 8556802-8559669 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001140
名称SmilChr07G001140
描述pentatricopeptide repeat-containing protein At5g02860-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向8556802 - 8559669 / -

ID 对照

NCBI Gene IDLOC130992314
GeneID130992314
locus_tag-
NCBI NameLOC130992314
原始查询SmilChr07G001140

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At5g02860-like
产物pentatricopeptide repeat-containing protein At5g02860-like
ArabidopsisAT5G02860 (AT5G02860)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831761]
identity=63.6; qcov=1.06; evalue=0; confidence=high
RiceOs07g0590600
-
identity=56.7; qcov=0.824; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130992314

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.60000 XP_057772870.1
2 Chloroplast 叶绿体 0.40000 XP_057772870.1
3 Chloroplast stroma 叶绿体基质 0.20000 XP_057772870.1
4 Nucleus 细胞核 0.00000 XP_057772870.1
5 Chromosome 染色体 0.00000 XP_057772870.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:8557246 C T EMS_canonical_SNV CDS_variant 1 B14
Chr7:8557669 G A EMS_canonical_SNV CDS_variant 1 B14
Chr7:8557672 G A EMS_canonical_SNV CDS_variant 1 D6
Chr7:8557713 C T EMS_canonical_SNV CDS_variant 1 B137
Chr7:8557846 G A EMS_canonical_SNV CDS_variant 1 B8
Chr7:8557997 C T EMS_canonical_SNV CDS_variant 1 C52
Chr7:8558043 C T EMS_canonical_SNV CDS_variant 2 B136,B32
Chr7:8558065 G A EMS_canonical_SNV CDS_variant 2 B136,B32
Chr7:8558245 C T EMS_canonical_SNV CDS_variant 2 B136,B32
Chr7:8558370 C CAA 2bp_insertion frameshift_variant 33 A22,A9,B105,B119,B127,B128,B135,B15,B19,B21,B24,B32,B41,B45,B54,B60,B62,B69,B73,B99,C1,C19,C22,C26,C34,C38,C51,C56,C6,C74,C79,C80,D6
Chr7:8558548 C CT 1bp_insertion frameshift_variant 190 A1,A10,A13,A15,A16,A18,A19,A21,A22,A23,A24,A3,A4,A5,A7,A8,A9,B1,B100,B101,B102,B104,B105,B107,B109,B110,B112,B113,B114,B115,B117,B119,B12,B120,B122,B123,B124,B127,B128,B129,B13,B131,B132,B133,B134,B135,B138,B139,B15,B16,B19,B2,B20,B21,B22,B23,B24,B25,B26,B28,B29,B3,B30,B31,B32,B34,B36,B37,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B53,B54,B55,B57,B6,B60,B62,B63,B64,B65,B66,B68,B69,B70,B71,B72,B73,B74,B76,B77,B79,B8,B80,B81,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B98,B99,C1,C10,C11,C14,C15,C16,C17,C18,C19,C20,C22,C24,C26,C27,C28,C29,C32,C33,C34,C35,C36,C37,C38,C39,C41,C43,C44,C45,C47,C48,C49,C5,C51,C52,C54,C55,C56,C57,C58,C6,C60,C61,C62,C63,C64,C66,C67,C68,C69,C70,C71,C72,C73,C74,C75,C76,C77,C79,C80,C82,C84,C85,C87,D11,D2,D3,D5,D6,D8,D9
Chr7:8558563 G A EMS_canonical_SNV CDS_variant 4 A2,B131,B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772870.1
774 aa
N
1
387
774
TPR_24
PPR_3
PPR_2
PPR
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_2
PPR
PPR_long
PPR_3
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR_2
PPR
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_1
PPR
C
PF23276 TPR_24 132-261 aa PF13812 PPR_3 151-213 aa PF13041 PPR_2 164-210 aa PF01535 PPR 167-196 aa PF13041 PPR_2 198-246 aa PF01535 PPR 201-232 aa PF17177 PPR_long 220-367 aa PF13812 PPR_3 223-283 aa PF12854 PPR_1 231-263 aa PF01535 PPR 237-266 aa PF13812 PPR_3 258-316 aa PF23276 TPR_24 262-366 aa PF12854 PPR_1 266-298 aa PF13041 PPR_2 269-318 aa PF01535 PPR 272-301 aa PF13812 PPR_3 293-339 aa PF12854 PPR_1 302-332 aa PF13041 PPR_2 304-351 aa PF01535 PPR 307-337 aa PF13812 PPR_3 328-389 aa PF12854 PPR_1 335-368 aa PF01535 PPR 342-372 aa PF13041 PPR_2 344-386 aa PF23276 TPR_24 355-471 aa PF13041 PPR_2 375-413 aa PF01535 PPR 378-407 aa PF17177 PPR_long 391-534 aa PF13812 PPR_3 397-456 aa PF01535 PPR 412-442 aa PF13812 PPR_3 433-490 aa PF01535 PPR 448-477 aa PF13041 PPR_2 448-493 aa PF13812 PPR_3 472-527 aa PF13041 PPR_2 479-528 aa PF01535 PPR 482-509 aa PF17177 PPR_long 565-656 aa PF13812 PPR_3 576-630 aa PF13041 PPR_2 584-628 aa PF01535 PPR 588-617 aa PF13041 PPR_2 619-665 aa PF01535 PPR 623-652 aa PF23276 TPR_24 630-705 aa PF13812 PPR_3 643-698 aa PF12854 PPR_1 650-683 aa PF13041 PPR_2 654-700 aa PF01535 PPR 657-687 aa PF13041 PPR_2 689-738 aa PF01535 PPR 692-722 aa PF12854 PPR_1 720-749 aa PF01535 PPR 727-750 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772870.1 Pfam PF23276 TPR_24 Repeat 132 261 3.7e-47 160.3 Pentatricopeptide repeat-containing protein
XP_057772870.1 Pfam PF13812 PPR_3 Repeat 151 213 1.2e-120 394.4 Pentatricopeptide repeat domain
XP_057772870.1 Pfam PF13041 PPR_2 Repeat 164 210 6.2e-151 491.2 PPR repeat family
XP_057772870.1 Pfam PF01535 PPR Repeat 167 196 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF13041 PPR_2 Repeat 198 246 6.2e-151 491.2 PPR repeat family
XP_057772870.1 Pfam PF01535 PPR Repeat 201 232 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF17177 PPR_long Repeat 220 367 4.3e-49 167.5 Pentacotripeptide-repeat region of PRORP
XP_057772870.1 Pfam PF13812 PPR_3 Repeat 223 283 1.2e-120 394.4 Pentatricopeptide repeat domain
XP_057772870.1 Pfam PF12854 PPR_1 Repeat 231 263 2e-116 380.1 PPR repeat
XP_057772870.1 Pfam PF01535 PPR Repeat 237 266 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF13812 PPR_3 Repeat 258 316 1.2e-120 394.4 Pentatricopeptide repeat domain
XP_057772870.1 Pfam PF23276 TPR_24 Repeat 262 366 3.7e-47 160.3 Pentatricopeptide repeat-containing protein
XP_057772870.1 Pfam PF12854 PPR_1 Repeat 266 298 2e-116 380.1 PPR repeat
XP_057772870.1 Pfam PF13041 PPR_2 Repeat 269 318 6.2e-151 491.2 PPR repeat family
XP_057772870.1 Pfam PF01535 PPR Repeat 272 301 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF13812 PPR_3 Repeat 293 339 1.2e-120 394.4 Pentatricopeptide repeat domain
XP_057772870.1 Pfam PF12854 PPR_1 Repeat 302 332 2e-116 380.1 PPR repeat
XP_057772870.1 Pfam PF13041 PPR_2 Repeat 304 351 6.2e-151 491.2 PPR repeat family
XP_057772870.1 Pfam PF01535 PPR Repeat 307 337 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF13812 PPR_3 Repeat 328 389 1.2e-120 394.4 Pentatricopeptide repeat domain
XP_057772870.1 Pfam PF12854 PPR_1 Repeat 335 368 2e-116 380.1 PPR repeat
XP_057772870.1 Pfam PF01535 PPR Repeat 342 372 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF13041 PPR_2 Repeat 344 386 6.2e-151 491.2 PPR repeat family
XP_057772870.1 Pfam PF23276 TPR_24 Repeat 355 471 3.7e-47 160.3 Pentatricopeptide repeat-containing protein
XP_057772870.1 Pfam PF13041 PPR_2 Repeat 375 413 6.2e-151 491.2 PPR repeat family
XP_057772870.1 Pfam PF01535 PPR Repeat 378 407 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF17177 PPR_long Repeat 391 534 4.3e-49 167.5 Pentacotripeptide-repeat region of PRORP
XP_057772870.1 Pfam PF13812 PPR_3 Repeat 397 456 1.2e-120 394.4 Pentatricopeptide repeat domain
XP_057772870.1 Pfam PF01535 PPR Repeat 412 442 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF13812 PPR_3 Repeat 433 490 1.2e-120 394.4 Pentatricopeptide repeat domain
XP_057772870.1 Pfam PF01535 PPR Repeat 448 477 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF13041 PPR_2 Repeat 448 493 6.2e-151 491.2 PPR repeat family
XP_057772870.1 Pfam PF13812 PPR_3 Repeat 472 527 1.2e-120 394.4 Pentatricopeptide repeat domain
XP_057772870.1 Pfam PF13041 PPR_2 Repeat 479 528 6.2e-151 491.2 PPR repeat family
XP_057772870.1 Pfam PF01535 PPR Repeat 482 509 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF17177 PPR_long Repeat 565 656 4.3e-49 167.5 Pentacotripeptide-repeat region of PRORP
XP_057772870.1 Pfam PF13812 PPR_3 Repeat 576 630 1.2e-120 394.4 Pentatricopeptide repeat domain
XP_057772870.1 Pfam PF13041 PPR_2 Repeat 584 628 6.2e-151 491.2 PPR repeat family
XP_057772870.1 Pfam PF01535 PPR Repeat 588 617 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF13041 PPR_2 Repeat 619 665 6.2e-151 491.2 PPR repeat family
XP_057772870.1 Pfam PF01535 PPR Repeat 623 652 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF23276 TPR_24 Repeat 630 705 3.7e-47 160.3 Pentatricopeptide repeat-containing protein
XP_057772870.1 Pfam PF13812 PPR_3 Repeat 643 698 1.2e-120 394.4 Pentatricopeptide repeat domain
XP_057772870.1 Pfam PF12854 PPR_1 Repeat 650 683 2e-116 380.1 PPR repeat
XP_057772870.1 Pfam PF13041 PPR_2 Repeat 654 700 6.2e-151 491.2 PPR repeat family
XP_057772870.1 Pfam PF01535 PPR Repeat 657 687 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF13041 PPR_2 Repeat 689 738 6.2e-151 491.2 PPR repeat family
XP_057772870.1 Pfam PF01535 PPR Repeat 692 722 3.2e-118 378.8 PPR repeat
XP_057772870.1 Pfam PF12854 PPR_1 Repeat 720 749 2e-116 380.1 PPR repeat
XP_057772870.1 Pfam PF01535 PPR Repeat 727 750 3.2e-118 378.8 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057916887.1
TTTTTTTCATGTTGATGTAGATGCAGGCCTTTCTTTGGGGAATCAATGGGGGATAAGCTGGATGCCATGCAACTAGTAGTGTAATCTAATCCATATCCAATTCCAAATTAAGTAATCGAAAGTGAAATTGGAAATTTCAATGGCGAAAAACTTAGGTCTCCCTCTTATCCTCCCAAACCCCCCTCCCTCTAAACCTTTCTTCCAAGACCAGTCCCCTTCCGCCGCCGGACCTCCTCTCCCCCCGCCCAACTTATCCCCTC...

CDS

1 records

下载 CDS FASTA
LOC130992314
ATGGCGAAAAACTTAGGTCTCCCTCTTATCCTCCCAAACCCCCCTCCCTCTAAACCTTTCTTCCAAGACCAGTCCCCTTCCGCCGCCGGACCTCCTCTCCCCCCGCCCAACTTATCCCCTCTCCTCCACGATTTCCTCACCCAACAAAACCCCGCCACCACCTCCTCCCTCCAGCAACCACGGCGTCGTATCGGCAAACACCGTGACCCCAACAAGGGCAAGCCCTGGCTCAACCGCCGCCTCTCTTCTCTAGGGGATTA...

Protein

1 records

下载 Protein FASTA
XP_057772870.1
MAKNLGLPLILPNPPPSKPFFQDQSPSAAGPPLPPPNLSPLLHDFLTQQNPATTSSLQQPRRRIGKHRDPNKGKPWLNRRLSSLGDYVDAVFSDLLGIIKGLGYHKKCDLALSVFEWIKSRTDSHKLINGSVVAVVISMLGKDGRISAAASLLHNLQKDGYGIDVYAYTSLITVFVRNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWHKIMAVFDGMKSSGVVPDAYTYNTVISCCRRGSLYEEAKAMFE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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