Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001159`

染色体: Chr07 坐标: 8673995-8674930 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001159`
名称	SmilChr07G001159
描述	late embryogenesis abundant protein Dc3
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	8673995 - 8674930 / `+`

ID 对照

NCBI Gene ID	`LOC130992333`
GeneID	`130992333`
locus_tag	`-`
NCBI Name	`LOC130992333`
原始查询	`SmilChr07G001159`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	late embryogenesis abundant protein Dc3
产物	late embryogenesis abundant protein Dc3
Arabidopsis	`AT3G15670` (AT3G15670) Late embryosis abundant protein (LEA) family protein [Source:NCBI gene (formerly Entrezgene);Acc:820810] identity=40.1; qcov=1.3; evalue=6.97e-29; confidence=medium
Rice	`Os05g0542500` (OsLEA3-1) late embryosis abundant protein 19-like [Source:NCBI gene (formerly Entrezgene);Acc:4339480] identity=37.7; qcov=1.15; evalue=6.77e-21; confidence=medium
GO	-
KEGG	-
Pfam	PF27970 (LEA1_2_D7_KIN2)
InterPro	-
eggNOG	-
NR	GeneID:130992333

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057772909.1`
2	Cytosol	细胞质基质	1.00000	`XP_057772910.1`
3	Nucleus	细胞核	0.00000	`XP_057772909.1`
4	Chromosome	染色体	0.00000	`XP_057772909.1`
5	Centromere	着丝粒	0.00000	`XP_057772909.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:8674370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B126,B32,B73
`Chr7:8674388`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B87,C20
`Chr7:8674467`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B131,B56,B96
`Chr7:8674545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,D7
`Chr7:8674590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:8674603`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr7:8674743`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C3
`Chr7:8674743`	`GA`	`G`	1bp_deletion	CDS_variant	1	C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772909.1

163 aa

163

LEA1_2_D7_KIN2

PF27970 LEA1_2_D7_KIN2 84-148 aa

XP_057772910.1

152 aa

152

LEA1_2_D7_KIN2

PF27970 LEA1_2_D7_KIN2 77-137 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772909.1`	Pfam	`PF27970`	LEA1_2_D7_KIN2	Family	84	148	1.8e-21	77.3	LEA protein 1/2/D7/Stress-induced protein KIN2
`XP_057772910.1`	Pfam	`PF27970`	LEA1_2_D7_KIN2	Family	77	137	2.3e-22	80.1	LEA protein 1/2/D7/Stress-induced protein KIN2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916926.1
ACTCTTCTGCATTCCAACAACCAACATTTCACTCACTACTTCAAAACTCAAATTTCCATTCATTATCCAAAAATGTCGGCTCGCGAGCAAGGCTACAGAGCTGGTGAAGCCAAGGGTCACGCTCAGGAGAAAACCGGGCGCGCGGTGGAGACGGTGAAGGACAAAGCTCAGGGGGCGAGGGACAAGGCCTCGGAGGCAGCGGAAGCAACGAGGGAGCGCGGCCGCGAGACCAAGGAGCAGACGGGGAGCTACGGGCAGGC...

XM_057916927.1
TGCATTCCAACAACCAACATTTCACTCACTACTTCAAAACTCAAATTTCCATTCATTATCCAAAAATGTCGGCTCGCGAGCAAGGCTACAGAGCTGGTGAAGCCAAGGGTCACGCTCAGGAGAAAACCGGGCGCGCGGTGGAGACGGTGAAGGACAAAGCTCAGGGGGCGAGGGACAAGGCCTCGGAGGCAGCGGAAGCAACGAGGGAGCGCGGCCGCGAGACCAAGGAGCAGACGGGGAGCTACGGGCAGGCCGCCAAG...

CDS

2 records

下载 CDS FASTA

LOC130992333
ATGTCGGCTCGCGAGCAAGGCTACAGAGCTGGTGAAGCCAAGGGTCACGCTCAGGAGAAAACCGGGCGCGCGGTGGAGACGGTGAAGGACAAAGCTCAGGGGGCGAGGGACAAGGCCTCGGAGGCAGCGGAAGCAACGAGGGAGCGCGGCCGCGAGACCAAGGAGCAGACGGGGAGCTACGGGCAGGCCGCCAAGGACAAGGCCGCCGGCGCGGCGGAGGCCACCAAGGACAAGGCCGCCGGCGCGGCGCAGGCCACCAA...

Protein

2 records

下载 Protein FASTA

XP_057772909.1
MSAREQGYRAGEAKGHAQEKTGRAVETVKDKAQGARDKASEAAEATRERGRETKEQTGSYGQAAKDKAAGAAEATKDKAAGAAQATKDKAAGAAQATKEKASEMAEAGRETAAAGREKSGGFLQKTGEQVKGMAQGAAEAVKHTFGMAEEDEEDALNKKRDNY

XP_057772910.1
MSAREQGYRAGEAKGHAQEKTGRAVETVKDKAQGARDKASEAAEATRERGRETKEQTGSYGQAAKDKAAGAAEATKDKAAGAAQATKEKASEMAEAGRETAAAGREKSGGFLQKTGEQVKGMAQGAAEAVKHTFGMAEEDEEDALNKKRDNY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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