当前解析结果
SmilChr07G001179| 统一新 Gene ID | SmilChr07G001179 |
|---|---|
| 名称 | SmilChr07G001179 |
| 描述 | pleiotropic drug resistance protein 1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 8929671 - 8937424 / + |
| NCBI Gene ID | LOC130992355 |
|---|---|
| GeneID | 130992355 |
| locus_tag | - |
| NCBI Name | LOC130992355 |
| 原始查询 | SmilChr07G001179 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pleiotropic drug resistance protein 1-like |
| 产物 | pleiotropic drug resistance protein 1-like |
| Arabidopsis | AT1G15520 (ABCG40)pleiotropic drug resistance 12 [Source:NCBI gene (formerly Entrezgene);Acc:838122] identity=67.2; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0609300 (OsPDR9)- identity=65.4; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF08370 (PDR_assoc); PF14510 (ABC_trans_N); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992355 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057772940.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057772940.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057772940.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057772940.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057772940.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:8930086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr7:8930185 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,C32,C68,D11 |
Chr7:8930979 |
AGT |
A |
2bp_deletion | frameshift_variant | 2 | B63,B86 |
Chr7:8930979 |
AGT |
A |
2bp_deletion | CDS_variant | 2 | B63,B86 |
Chr7:8932474 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr7:8932695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr7:8932844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr7:8932907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr7:8932952 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr7:8933021 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,B72 |
Chr7:8933045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C33,C46,D10,D11 |
Chr7:8933051 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C33,C46,D10,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772940.1PF14510
ABC_trans_N 86-136 aa
PF00005
ABC_tran 161-342 aa
PF19055
ABC2_membrane_7 376-448 aa
PF01061
ABC2_membrane 497-709 aa
PF08370
PDR_assoc 714-779 aa
PF00005
ABC_tran 836-988 aa
PF01061
ABC2_membrane 1133-1347 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772940.1 |
Pfam | PF14510 |
ABC_trans_N | Domain | 86 | 136 | 2.2e-07 | 31.8 | ABC-transporter N-terminal |
XP_057772940.1 |
Pfam | PF00005 |
ABC_tran | Domain | 161 | 342 | 2.1e-38 | 132.8 | ABC transporter |
XP_057772940.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 376 | 448 | 8.3e-12 | 45.4 | ABC-2 type transporter |
XP_057772940.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 497 | 709 | 1.8e-99 | 332.3 | ABC-2 type transporter |
XP_057772940.1 |
Pfam | PF08370 |
PDR_assoc | Family | 714 | 779 | 1.4e-23 | 83.1 | Plant PDR ABC transporter associated |
XP_057772940.1 |
Pfam | PF00005 |
ABC_tran | Domain | 836 | 988 | 2.1e-38 | 132.8 | ABC transporter |
XP_057772940.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 1133 | 1347 | 1.8e-99 | 332.3 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。