Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001203`

染色体: Chr07 坐标: 9172020-9177330 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001203`
名称	SmilChr07G001203
描述	D-glycerate 3-kinase, chloroplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	9172020 - 9177330 / `+`

ID 对照

NCBI Gene ID	`LOC130992379`
GeneID	`130992379`
locus_tag	`-`
NCBI Name	`LOC130992379`
原始查询	`SmilChr07G001203`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog
描述	D-glycerate 3-kinase, chloroplastic
产物	D-glycerate 3-kinase%2C chloroplastic
Arabidopsis	`AT1G80380` (AT1G80380) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844378] identity=73.1; qcov=0.825; evalue=0; confidence=high
Rice	`Os01g0682500` - identity=76.7; qcov=0.722; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0009853 (photorespiration)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130992379

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057772961.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057772961.1`
3	Nucleus	细胞核	0.00000	`XP_057772961.1`
4	Chromosome	染色体	0.00000	`XP_057772961.1`
5	Centromere	着丝粒	0.00000	`XP_057772961.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:9173620`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr7:9173875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr7:9173951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B101,B12,B55
`Chr7:9174564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr7:9174890`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B78,B82

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057916981.1
TAAATAGAAGACATTATTTGTGTGTATATGGTTTCTTTTAAATCCAATCCACATTTTGAAAAGAGAGAATTCTTTGATGAGGAGTAACTCAATCCCATCTGACGTGGCAGAATTGAAAATCTTTAGGCGATAACAATGGCGGTGCTGACTGTACTATCGCCGCCCTCCTTGCCGACGTCATCATCCTCCATTCTCTATCATTTTTATAATAATGACTCTACAAATTGCTATTTTTGGCACAAGAATGTTTCCAAATGGAC...

XM_057916982.1
TAAATAGAAGACATTATTTGTGTGTATATGGTTTCTTTTAAATCCAATCCACATTTTGAAAAGAGAGAATTCTTTGATGAGGAGTAACTCAATCCCATCTGACGTGGCAGAATTGAAAATCTTTAGGCGATAACAATGGCGGTGCTGACTGTACTATCGCCGCCCTCCTTGCCGACGTCATCATCCTCCATTCTCTATCATTTTTATAATAATGACTCTACAAATTGCTATTTTTGGCACAAGAATGTTTCCAAATGGAC...

CDS

6 records

下载 CDS FASTA

LOC130992379
ATGAATATTTTACCACATAAATCGAAATTTTGTATTCCTCCCGCATTTGCAGAGGCGATAACAATGGCGGTGCTGACTGTACTATCGCCGCCCTCCTTGCCGACGTCATCATCCTCCATTCTCTATCATTTTTATAATAATGACTCTACAAATTGCTATTTTTGGCACAAGAATGTTTCCAAATGGACTCCAATTTCCGCTGTTTCTAAACGCAAAAACGGACCAGCTAAATCACAGATACACTTGATGCAGTCTTCAAC...

Protein

6 records

下载 Protein FASTA

XP_057772961.1
MNILPHKSKFCIPPAFAEAITMAVLTVLSPPSLPTSSSSILYHFYNNDSTNCYFWHKNVSKWTPISAVSKRKNGPAKSQIHLMQSSTSSGSRCLWIKGTSSVHDKIAGQERREGLSLSVLPTTAAQVSSVEDLYEFICSGPLLDKVGLNQDKVAESIDKWILCGSQLCRLFRLNELFLTEPQKVRIYHYYIPVFMWCEQEISLHSSKFKDEDDIPPLVIGFSAPQGCGKTTLVFALDFLFQVTGRRTATISIDDFYLTAE...

XP_057772962.1
MNILPHKSKFCIPPAFAEAITMAVLTVLSPPSLPTSSSSILYHFYNNDSTNCYFWHKNVSKWTPISAVSKRKNGPAKSQIHLMQSSTSSGSRCLWIKGTSSVHDKIAGQERREGLSLSVLPTTAAQVSSVEDLYEFICSGPLLDKVGLNQDKVAESIDKWILCGSQLCRLFRLNELFLTEPQKVRIYHYYIPVFMWCEQEISLHSSKFKDEDDIPPLVIGFSAPQGCGKTTLVFALDFLFQVTGRRTATISIDDFYLTAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器