Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001213`

染色体: Chr07 坐标: 9267792-9271501 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001213`
名称	SmilChr07G001213
描述	uncharacterized SmilChr07G001213
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	9267792 - 9271501 / `-`

ID 对照

NCBI Gene ID	`LOC130992388`
GeneID	`130992388`
locus_tag	`-`
NCBI Name	`LOC130992388`
原始查询	`SmilChr07G001213`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820838]; symbol=AT3G15940; hit=AT3G15940; species=arabidopsis; confidence=high
产物	UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820838]; symbol=AT3G15940; hit=AT3G15940; species=arabidopsis; confidence=high
Arabidopsis	`AT3G15940` (AT3G15940) UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820838] identity=55.5; qcov=1; evalue=0; confidence=high
Rice	`Os01g0262600` (OsGT1) - identity=42; qcov=0.211; evalue=1.21e-26; confidence=weak
GO	GO:0016757 (glycosyltransferase activity)
KEGG	-
Pfam	PF00534 (Glycos_transf_1); PF13524 (Glyco_trans_1_2); PF13692 (Glyco_trans_1_4); PF16994 (Glyco_trans_4_5)
InterPro	-
eggNOG	-
NR	GeneID:130992388

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057772981.1`
2	Nucleus	细胞核	0.00000	`XP_057772981.1`
3	Chromosome	染色体	0.00000	`XP_057772981.1`
4	Centromere	着丝粒	0.00000	`XP_057772981.1`
5	Chromatin	染色质	0.00000	`XP_057772981.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:9267989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B123,B131,C33,C46,D11
`Chr7:9268393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:9268817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B131,B56,B96
`Chr7:9268850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B6,C67
`Chr7:9268885`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr7:9268993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr7:9269044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr7:9269090`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B72,B90,B92,C21,C25
`Chr7:9269123`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr7:9269236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:9269237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,B65,B72
`Chr7:9269252`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B21,B93,C48,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772981.1

712 aa

356

712

Glyco_trans_4_5

Glyco_trans_1_4

Glycos_transf_1

Glyco_trans_1_2

PF16994 Glyco_trans_4_5 242-411 aa PF13692 Glyco_trans_1_4 561-673 aa PF00534 Glycos_transf_1 574-686 aa PF13524 Glyco_trans_1_2 594-700 aa

XP_057772982.1

712 aa

356

712

Glyco_trans_4_5

Glyco_trans_1_4

Glycos_transf_1

Glyco_trans_1_2

PF16994 Glyco_trans_4_5 242-411 aa PF13692 Glyco_trans_1_4 561-673 aa PF00534 Glycos_transf_1 574-686 aa PF13524 Glyco_trans_1_2 594-700 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772981.1`	Pfam	`PF16994`	Glyco_trans_4_5	Family	242	411	3.8e-73	245.4	Glycosyl-transferase family 4
`XP_057772981.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	561	673	3.9e-17	63.6	Glycosyl transferases group 1
`XP_057772981.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	574	686	5.9e-22	78.7	Glycosyl transferases group 1
`XP_057772981.1`	Pfam	`PF13524`	Glyco_trans_1_2	Domain	594	700	8.8e-06	26.5	Glycosyl transferase-like
`XP_057772982.1`	Pfam	`PF16994`	Glyco_trans_4_5	Family	242	411	3.8e-73	245.4	Glycosyl-transferase family 4
`XP_057772982.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	561	673	3.9e-17	63.6	Glycosyl transferases group 1
`XP_057772982.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	574	686	5.9e-22	78.7	Glycosyl transferases group 1
`XP_057772982.1`	Pfam	`PF13524`	Glyco_trans_1_2	Domain	594	700	8.8e-06	26.5	Glycosyl transferase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916998.1
CTCCCAAACTTGTGTTTGTGCAAGCGAACTTCTTTTACTCACGTCACGTGACATCTGTCTCTCTTGACACACTGCGGTCTGCAGCTCTCTCTCTCCTGCGTCTTTTACCTCAAAGAATTTACCGCAGCTGCAGTGAGAGCTGACGCACTCAAGTAAAAATAGTTCACTTGCTTGATGTGCACACCGACTTTAGAGTTGTCGGTGCCATCCCAAATCCACTCAAGATCTTCTCGTTTCCCCGCGTTTCTAGAAAACAAAAC...

XM_057916999.1
ACATCTGTCTCTCTTGACACACTGCGGTCTGCAGCTCTCTCTCTCCTGCGTCTTTTACCTCAAAGAATTTACCGCAGCTGCAGTGAGAGCTGACGCACTCAAGTAAAAATAGTTCACTTGCTTGATGTGCACACCGACTTTAGAGTTGTCGGTGCCATCCCAAATCCACTCAAGATCTTCTCGTTTCCCCGCGTTTCTAGAAAACAAAACTCGGATCTTCTTCTGCTCTAAAACTTTTCCTCATTATTCACTTTCACCTC...

CDS

2 records

下载 CDS FASTA

LOC130992388
ATGGAGGATATGAACATAGTTAGGTTGTCCCCATTGAGGCCAGGCGGTGGTGGCTTGAAGTCGCCTTCGTCGGGAAAGTCAACTCCGAGGGGCTCTCCTTCTTTTAGGAGGCTGAGCTCCGGCCGGACTCCGAGAAGAGAGGGCAGGAGTGGTGGTTATATTTTTTCGTATTGCTTCAGAAGCAACCGCATTGTGCTTTGGCTGCTTTTGATCACTCTTTGGGCTTATGCTGGATTCTACTTCCAGTCGAGATGGGCGCA...

Protein

2 records

下载 Protein FASTA

XP_057772981.1
MEDMNIVRLSPLRPGGGGLKSPSSGKSTPRGSPSFRRLSSGRTPRREGRSGGYIFSYCFRSNRIVLWLLLITLWAYAGFYFQSRWAHGDNKEDLFSGGYGGEIKGGKSAAQRSNRRGLIAAVDSGALEFKNGTSNSSSENVDVVLAESGSGNSLNKNKASKKRSKRSGHGSRRRSSGKVKVVAQDVESEVDDVQMEEIPKKNTTYGFLVGPFGSVEDSILDWSPEKRSGTCDRKGAFARLVWSRKFVLIFHELSMTGAPL...

XP_057772982.1
MEDMNIVRLSPLRPGGGGLKSPSSGKSTPRGSPSFRRLSSGRTPRREGRSGGYIFSYCFRSNRIVLWLLLITLWAYAGFYFQSRWAHGDNKEDLFSGGYGGEIKGGKSAAQRSNRRGLIAAVDSGALEFKNGTSNSSSENVDVVLAESGSGNSLNKNKASKKRSKRSGHGSRRRSSGKVKVVAQDVESEVDDVQMEEIPKKNTTYGFLVGPFGSVEDSILDWSPEKRSGTCDRKGAFARLVWSRKFVLIFHELSMTGAPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器