Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001217

染色体: Chr07 坐标: 9317142-9318553 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001217
名称SmilChr07G001217
描述NDR1/HIN1-like protein 6
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向9317142 - 9318553 / +

ID 对照

NCBI Gene IDLOC130992394
GeneID130992394
locus_tag-
NCBI NameLOC130992394
原始查询SmilChr07G001217

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述NDR1/HIN1-like protein 6
产物NDR1/HIN1-like protein 6
ArabidopsisAT2G01080 (AT2G01080)
Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:NCBI gene (formerly Entrezgene);Acc:814636]
identity=28.8; qcov=0.716; evalue=5.51e-08; confidence=low
RiceOs03g0262700
-
identity=29.2; qcov=0.838; evalue=6.33e-11; confidence=low
GOGO:0005886 (plasma membrane)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130992394

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057772988.1
2 Vacuole 液泡 0.40000 XP_057772988.1
3 Vacuole membrane 液泡膜 0.40000 XP_057772988.1
4 Nucleus 细胞核 0.00000 XP_057772988.1
5 Chromosome 染色体 0.00000 XP_057772988.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:9317247 C T EMS_canonical_SNV CDS_variant 3 A7,B140,B72
Chr7:9317321 C T EMS_canonical_SNV CDS_variant 5 A18,B1,B101,B48,C30
Chr7:9317325 G A EMS_canonical_SNV CDS_variant 3 A7,B140,B72
Chr7:9317357 C T EMS_canonical_SNV CDS_variant 2 B100,C2
Chr7:9317727 G A EMS_canonical_SNV CDS_variant 3 B31,B71,C60
Chr7:9317729 C T EMS_canonical_SNV CDS_variant 2 B100,C2
Chr7:9317764 CA C 1bp_deletion frameshift_variant 2 B121,C42
Chr7:9317764 CA C 1bp_deletion CDS_variant 2 B121,C42

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057917005.1
CTCAATCAAAAACCCTCAAAATCAAATATTAAGACATCATATCATAGAAAATGTCCAAGAAAATGAAGAATTTTGTCCCAAATGAGGAAAGAAACATCTTCACACCACTCACCTTGTCAGGATCTAAACATCCCATTCTCCTTCAAGAAAACCCTCTTATTTTTTTTGCTCTTCATTTTCTTGGTCATCTTCATCGTAGGAGTTCCTCTTCTTTGCATGTTCTTCGTCTTGAAGCCAAAGATGCCCGATTTCTCTCTCCA...
XM_057917007.1
CTCAATCAAAAACCCTCAAAATCAAATATTAAGACATCATATCATAGAAAATGTCCAAGAAAATGAAGAATTTTGTCCCAAATGAGGAAAGAAACATCTTCACACCACTCACCTTGTCAGGATCTAAACATCCCATTCTCCTTCAAGAAAACCCTCTTATTTTTTTTGCTCTTCATTTTCTTGGTCATCTTCATCGTAGGAGTTCCTCTTCTTTGCATGTTCTTCGTCTTGAAGCCAAAGATGCCCGATTTCTCTCTCCA...

CDS

2 records

下载 CDS FASTA
LOC130992394
ATGAGGAAAGAAACATCTTCACACCACTCACCTTGTCAGGATCTAAACATCCCATTCTCCTTCAAGAAAACCCTCTTATTTTTTTTGCTCTTCATTTTCTTGGTCATCTTCATCGTAGGAGTTCCTCTTCTTTGCATGTTCTTCGTCTTGAAGCCAAAGATGCCCGATTTCTCTCTCCAAAACCTTGATGTAGAATCCTACAAGCTCGACTTGAGCTCCCAAAACCTCGTCGTTTCATCTGTTTTCGCTCTCAACTTGAA...
LOC130992394
ATGAGGAAAGAAACATCTTCACACCACTCACCTTGTCAGGATCTAAACATCCCATTCTCCTTCAAGAAAACCCTCTTATTTTTTTTGCTCTTCATTTTCTTGGTCATCTTCATCGTAGGAGTTCCTCTTCTTTGCATGTTCTTCGTCTTGAAGCCAAAGATGCCCGATTTCTCTCTCCAAAACCTTGATGTAGAATCCTACAAGCTCGACTTGAGCTCCCAAAACCTCGTCGTTTCATCTGTTTTCGCTCTCAACTTGAA...

Protein

2 records

下载 Protein FASTA
XP_057772988.1
MRKETSSHHSPCQDLNIPFSFKKTLLFFLLFIFLVIFIVGVPLLCMFFVLKPKMPDFSLQNLDVESYKLDLSSQNLVVSSVFALNLKADNPNKVGLSFEASRFYVLSQGLVVGLIRIPQFHQPPLSKNVSVQTRVLFECVNVSEIMDRNSRKYQSSKGASDDIRILGDVSAQVRIFNIVLPKIKVALDCGINVSQSKLSVSNVEVYSMRWIPNQLFSLPLNSQTVSKKCSLAILM
XP_057772990.1
MRKETSSHHSPCQDLNIPFSFKKTLLFFLLFIFLVIFIVGVPLLCMFFVLKPKMPDFSLQNLDVESYKLDLSSQNLVVSSVFALNLKADNPNKVGLSFEASRFYVLSQGLVVGLIRIPQFHQPPLSKNVSVQTRVLFECVNVSEIMDRNSRKYQSSKGASDDIRILGDVSAQVRIFNIVLPKIKFSLPLNSQTVSKKCSLAILM

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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