Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001260`

染色体: Chr07 坐标: 9699954-9703419 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001260`
名称	SmilChr07G001260
描述	cleavage stimulating factor 64
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	9699954 - 9703419 / `-`

ID 对照

NCBI Gene ID	`LOC130992431`
GeneID	`130992431`
locus_tag	`-`
NCBI Name	`LOC130992431`
原始查询	`SmilChr07G001260`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cleavage stimulating factor 64
产物	cleavage stimulating factor 64
Arabidopsis	`AT1G73840` (ESP1) hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:843720] identity=46.8; qcov=1.05; evalue=1.17e-70; confidence=high
Rice	`Os05g0513300` - identity=32.1; qcov=0.679; evalue=2.12e-17; confidence=low
GO	GO:0031124 (mRNA 3'-end processing)
KEGG	-
Pfam	PF14304 (CSTF_C); PF14327 (CSTF2_hinge)
InterPro	-
eggNOG	-
NR	GeneID:130992431

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773038.1`
2	Nucleoplasm	核质	1.00000	`XP_057773038.1`
3	Nuclear body	核内小体	0.80000	`XP_057773038.1`
4	Chromosome	染色体	0.00000	`XP_057773038.1`
5	Centromere	着丝粒	0.00000	`XP_057773038.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:9700279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr7:9700290`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr7:9700294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B44,C72
`Chr7:9701261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr7:9701400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B44,B66,C32,C68
`Chr7:9701445`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:9701588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr7:9701706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,C52,C65
`Chr7:9703247`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B6
`Chr7:9703247`	`GC`	`G`	1bp_deletion	CDS_variant	1	B6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773038.1

398 aa

199

398

CSTF2_hinge

CSTF_C

PF14327 CSTF2_hinge 13-70 aa PF14304 CSTF_C 365-398 aa

XP_057773039.1

386 aa

193

386

CSTF2_hinge

CSTF_C

PF14327 CSTF2_hinge 13-70 aa PF14304 CSTF_C 353-386 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773038.1`	Pfam	`PF14327`	CSTF2_hinge	Family	13	70	2.7e-16	60.5	Hinge domain of cleavage stimulation factor subunit 2
`XP_057773038.1`	Pfam	`PF14304`	CSTF_C	Domain	365	398	6.1e-11	42.5	Transcription termination and cleavage factor C-terminal
`XP_057773039.1`	Pfam	`PF14327`	CSTF2_hinge	Family	13	70	8.9e-17	62.0	Hinge domain of cleavage stimulation factor subunit 2
`XP_057773039.1`	Pfam	`PF14304`	CSTF_C	Domain	353	386	6.1e-11	42.5	Transcription termination and cleavage factor C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917055.1
ACTTCTAAATCAAGAAAATCTATTCAGCCAAACAAGCCCTAATTAGACATCAATATTGGGTATTTCTTCCAGGAGTCAGGACGCTCGGTTTCTCTGTTAAAAAAACTTTTGGGTGCGGAAAGAAGAATGGCGGGAAAGCAAATCTCCGGCGACGGAGTTCCACCGAGCCTCGCCGGAATGTCCAAAAACCAGCTCTACGACATCATGTGTCAGATGAAGGCATTGATAGAGCAGAACAAGCAACAAGCGAGGCAAATTCT...

XM_057917056.1
GTATTTCTTCCAGGAGTCAGGACGCTCGGTTTCTCTGTTAAAAAAACTTTTGGGTGCGGAAAGAAGAATGGCGGGAAAGCAAATCTCCGGCGACGGAGTTCCACCGAGCCTCGCCGGAATGTCCAAAAACCAGCTCTACGACATCATGTGTCAGATGAAGGCATTGATAGAGCAGAACAAGCAACAAGCGAGGCAAATTCTAATCCAGAATCCAGCTTTGACGAAAGCTCTTTTTCAGGCACAAATCATGCTTGGAATGG...

CDS

2 records

下载 CDS FASTA

LOC130992431
ATGGCGGGAAAGCAAATCTCCGGCGACGGAGTTCCACCGAGCCTCGCCGGAATGTCCAAAAACCAGCTCTACGACATCATGTGTCAGATGAAGGCATTGATAGAGCAGAACAAGCAACAAGCGAGGCAAATTCTAATCCAGAATCCAGCTTTGACGAAAGCTCTTTTTCAGGCACAAATCATGCTTGGAATGGTGCAGTCCTCACAAGCATCACCGGCCATTTCATCTGCAGTATCTCAGAATCCACAGCCATCAGCTAT...

Protein

2 records

下载 Protein FASTA

XP_057773038.1
MAGKQISGDGVPPSLAGMSKNQLYDIMCQMKALIEQNKQQARQILIQNPALTKALFQAQIMLGMVQSSQASPAISSAVSQNPQPSAISNQQPTIQAAAPVSGPIGQNQIRKQQLNQPMASHPPSQPHPPPNPQPQSMPSHPLHQTQQPKGHISAQSMPMSVPQPSQVSSLTQLPQHTASQSPSLHHLPMPSLLTQSQQPLPNTGSQYLPLQPPLPPQPRPPMPGFPHQAQAQMGPNPGFQHPSGPQMHHSQHMFHSGSKP...

XP_057773039.1
MAGKQISGDGVPPSLAGMSKNQLYDIMCQMKALIEQNKQQARQILIQNPALTKALFQAQIMLGMVQSSQASPAISSAVSQNPQPSAISNQQPTIQAAAPVSGPIGQNQIRKQQLNQPMASHPPSQPHPPPNPQPQSMPSHPLHQTQQPKGHISAQSMPMSVPQPSQVSSLTQLPQHTASQSPSLHHLPMPSLLTQSQQPLPNTGSQYLPLQPPLPPQPRPPMPGFPHQAQAQMGPNPGFQHPSGPQMHHSQHMFHSGSKP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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