Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001275`

染色体: Chr07 坐标: 9802984-9807443 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001275`
名称	SmilChr07G001275
描述	protein disulfide isomerase-like 1-6
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	9802984 - 9807443 / `-`

ID 对照

NCBI Gene ID	`LOC130992446`
GeneID	`130992446`
locus_tag	`-`
NCBI Name	`LOC130992446`
原始查询	`SmilChr07G001275`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein disulfide isomerase-like 1-6
产物	protein disulfide isomerase-like 1-6
Arabidopsis	`AT3G16110` (PDIL1-6) PDI-like 1-6 [Source:NCBI gene (formerly Entrezgene);Acc:820856] identity=59.8; qcov=0.961; evalue=0; confidence=high
Rice	`Os06g0163400` (PDIL1) - identity=55.8; qcov=0.879; evalue=0; confidence=high
GO	GO:0003756 (protein disulfide isomerase activity); GO:0005783 (endoplasmic reticulum); GO:0006457 (protein folding); GO:0034976 (response to endoplasmic reticulum stress)
KEGG	smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF00085 (Thioredoxin); PF13848 (Thioredoxin_6)
InterPro	-
eggNOG	-
NR	GeneID:130992446

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057773062.1`
2	Endoplasmic reticulum lumen	内质网腔	1.00000	`XP_057773062.1`
3	Melanosome	Melanosome	0.20000	`XP_057773062.1`
4	Nucleus	细胞核	0.00000	`XP_057773062.1`
5	Chromosome	染色体	0.00000	`XP_057773062.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:9803503`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B12,C3,C51,D1
`Chr7:9804209`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B12,C3,C51,D1
`Chr7:9804498`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr7:9805071`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B34
`Chr7:9805718`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr7:9805745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B114,B131,B56,B96
`Chr7:9805829`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:9805844`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:9806283`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B12,C3,C51,D1
`Chr7:9806747`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B115,B12,C3,C51,D1
`Chr7:9807104`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773062.1

564 aa

282

564

Thioredoxin

Thioredoxin_6

Thioredoxin

PF00085 Thioredoxin 81-178 aa PF13848 Thioredoxin_6 213-397 aa PF00085 Thioredoxin 421-504 aa

XP_057773063.1

538 aa

269

538

Thioredoxin

Thioredoxin_6

Thioredoxin

PF00085 Thioredoxin 81-178 aa PF13848 Thioredoxin_6 213-397 aa PF00085 Thioredoxin 421-523 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773062.1`	Pfam	`PF00085`	Thioredoxin	Domain	81	178	5.4e-31	107.4	Thioredoxin
`XP_057773062.1`	Pfam	`PF13848`	Thioredoxin_6	Domain	213	397	1.5e-20	74.6	Thioredoxin-like domain
`XP_057773062.1`	Pfam	`PF00085`	Thioredoxin	Domain	421	504	5.4e-31	107.4	Thioredoxin
`XP_057773063.1`	Pfam	`PF00085`	Thioredoxin	Domain	81	178	4.9e-32	110.7	Thioredoxin
`XP_057773063.1`	Pfam	`PF13848`	Thioredoxin_6	Domain	213	397	1.4e-20	74.6	Thioredoxin-like domain
`XP_057773063.1`	Pfam	`PF00085`	Thioredoxin	Domain	421	523	4.9e-32	110.7	Thioredoxin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917080.1
AAATCATTGTAAAATCTCAATGCTTTTTTAATCCTTAAACCCTCTAAACTAGAGCACGTTGCCGCATTAATTTCGCACTCCCACCATTTCACATTCAACTATATAAACTATCCAAACAAACAGATCTCACACAACAAAAAGTCCCCATCTTTACTTCAAAAATCTTCAAGAATCTTGTAAATCAACCTACAAATCGCCATGTACAGCCCCAGGTTCAGCTCAAGAACCCTTCTTCTCCCCGCAATTCTACTCCTCCTCCT...

XM_057917079.1
AAATCATTGTAAAATCTCAATGCTTTTTTAATCCTTAAACCCTCTAAACTAGAGCACGTTGCCGCATTAATTTCGCACTCCCACCATTTCACATTCAACTATATAAACTATCCAAACAAACAGATCTCACACAACAAAAAGTCCCCATCTTTACTTCAAAAATCTTCAAGAATCTTGTAAATCAACCTACAAATCGCCATGTACAGCCCCAGGTTCAGCTCAAGAACCCTTCTTCTCCCCGCAATTCTACTCCTCCTCCT...

CDS

2 records

下载 CDS FASTA

LOC130992446
ATGTACAGCCCCAGGTTCAGCTCAAGAACCCTTCTTCTCCCCGCAATTCTACTCCTCCTCCTCACTGCTGCATCAGTTTCATCAGAAAATGAAGATGCCGATGATCTGGGCGACATTGATGAACTCATCGCAATAGACGACGAGCAAGAAAATGGCGAGAATTCGCAGCCCACGACAGCCTATTTTGAAAGTAGAGAAGCCGGAAAGAAATCCGAGGTGTTGAGCAGAGCTCAGAGAGTAGTTCTTGAGCTCAACGGTGA...

Protein

2 records

下载 Protein FASTA

XP_057773062.1
MYSPRFSSRTLLLPAILLLLLTAASVSSENEDADDLGDIDELIAIDDEQENGENSQPTTAYFESREAGKKSEVLSRAQRVVLELNGDSAKRAIEENEYVMVLGYAPWCGRSAELMPRFAEAANVLKGLGSRVLLAKIDGDRYTKAASSLEIKGFPTLLLFVNGSSRPYTGGFSSEEIVLWTRKKTGAPVIGMSSVADANEFLKQHSTYAVGLFDKFEGPDYGEFVKAAVADNEVQFVETSSTEVAKVLYPVGTPTKPFFG...

XP_057773063.1
MYSPRFSSRTLLLPAILLLLLTAASVSSENEDADDLGDIDELIAIDDEQENGENSQPTTAYFESREAGKKSEVLSRAQRVVLELNGDSAKRAIEENEYVMVLGYAPWCGRSAELMPRFAEAANVLKGLGSRVLLAKIDGDRYTKAASSLEIKGFPTLLLFVNGSSRPYTGGFSSEEIVLWTRKKTGAPVIGMSSVADANEFLKQHSTYAVGLFDKFEGPDYGEFVKAAVADNEVQFVETSSTEVAKVLYPVGTPTKPFFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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