当前解析结果
SmilChr07G001276| 统一新 Gene ID | SmilChr07G001276 |
|---|---|
| 名称 | SmilChr07G001276 |
| 描述 | ABC transporter C family member 8-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 9809019 - 9814843 / + |
| NCBI Gene ID | LOC130992447 |
|---|---|
| GeneID | 130992447 |
| locus_tag | - |
| NCBI Name | LOC130992447 |
| 原始查询 | SmilChr07G001276 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter C family member 8-like |
| 产物 | ABC transporter C family member 8-like |
| Arabidopsis | AT3G21250 (ABCC8)multidrug resistance-associated protein 6 [Source:NCBI gene (formerly Entrezgene);Acc:821679] identity=61.4; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0196100 (OsABCC14)- identity=57; qcov=1; evalue=0; confidence=high |
| GO | GO:0000325 (plant-type vacuole); GO:0005524 (ATP binding); GO:0005774 (vacuolar membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992447 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057773064.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057773064.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057773064.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057773064.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057773064.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:9810040 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B34 |
Chr7:9810084 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D10 |
Chr7:9810084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:9810118 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B34 |
Chr7:9810130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr7:9810340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr7:9810536 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B114,B131,B56,B96 |
Chr7:9810561 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr7:9810581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:9810667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B115,B12,C3,C51,D1 |
Chr7:9810694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B53,B77,C62 |
Chr7:9810745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C32,C68,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773064.1PF00664
ABC_membrane 92-360 aa
PF00005
ABC_tran 426-558 aa
PF00664
ABC_membrane 704-965 aa
PF00005
ABC_tran 1037-1185 aa
XP_057773065.1PF00664
ABC_membrane 92-360 aa
PF00005
ABC_tran 426-558 aa
PF00664
ABC_membrane 704-965 aa
PF00005
ABC_tran 1037-1185 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773064.1 |
Pfam | PF00664 |
ABC_membrane | Family | 92 | 360 | 4.9e-45 | 155.1 | ABC transporter transmembrane region |
XP_057773064.1 |
Pfam | PF00005 |
ABC_tran | Domain | 426 | 558 | 2.7e-48 | 164.8 | ABC transporter |
XP_057773064.1 |
Pfam | PF00664 |
ABC_membrane | Family | 704 | 965 | 4.9e-45 | 155.1 | ABC transporter transmembrane region |
XP_057773064.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1037 | 1185 | 2.7e-48 | 164.8 | ABC transporter |
XP_057773065.1 |
Pfam | PF00664 |
ABC_membrane | Family | 92 | 360 | 4.9e-45 | 155.1 | ABC transporter transmembrane region |
XP_057773065.1 |
Pfam | PF00005 |
ABC_tran | Domain | 426 | 558 | 2.7e-48 | 164.8 | ABC transporter |
XP_057773065.1 |
Pfam | PF00664 |
ABC_membrane | Family | 704 | 965 | 4.9e-45 | 155.1 | ABC transporter transmembrane region |
XP_057773065.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1037 | 1185 | 2.7e-48 | 164.8 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。