当前解析结果
SmilChr07G001278| 统一新 Gene ID | SmilChr07G001278 |
|---|---|
| 名称 | SmilChr07G001278 |
| 描述 | glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 9841209 - 9844751 / - |
| NCBI Gene ID | LOC130992450 |
|---|---|
| GeneID | 130992450 |
| locus_tag | - |
| NCBI Name | LOC130992450 |
| 原始查询 | SmilChr07G001278 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR-like |
| 产物 | glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR-like |
| Arabidopsis | AT1G79870 (AT1G79870)D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:844326] identity=62.2; qcov=0.978; evalue=1.17e-136; confidence=high |
| Rice | Os01g0228600 (OsHPR2-1)- identity=58.8; qcov=0.981; evalue=5.47e-132; confidence=high |
| GO | GO:0005829 (cytosol); GO:0016618 (hydroxypyruvate reductase [NAD(P)H] activity); GO:0030267 (glyoxylate reductase (NADPH) activity); GO:0051287 (NAD binding) |
| KEGG | - |
| Pfam | PF00389 (2-Hacid_dh); PF02826 (2-Hacid_dh_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992450 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057773070.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057773070.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057773070.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057773070.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057773070.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:9844315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B91,C35,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773070.1PF00389
2-Hacid_dh 10-318 aa
PF02826
2-Hacid_dh_C 116-287 aa
XP_057773071.1PF00389
2-Hacid_dh 10-318 aa
PF02826
2-Hacid_dh_C 116-287 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773070.1 |
Pfam | PF00389 |
2-Hacid_dh | Domain | 10 | 318 | 1.6e-22 | 80.3 | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain |
XP_057773070.1 |
Pfam | PF02826 |
2-Hacid_dh_C | Domain | 116 | 287 | 2.1e-51 | 174.5 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
XP_057773071.1 |
Pfam | PF00389 |
2-Hacid_dh | Domain | 10 | 318 | 1.6e-22 | 80.3 | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain |
XP_057773071.1 |
Pfam | PF02826 |
2-Hacid_dh_C | Domain | 116 | 287 | 2.1e-51 | 174.5 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。