Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001300`

染色体: Chr07 坐标: 9974509-9976969 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001300`
名称	SmilChr07G001300
描述	auxin-responsive protein IAA27-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	9974509 - 9976969 / `-`

ID 对照

NCBI Gene ID	`LOC130992466`
GeneID	`130992466`
locus_tag	`-`
NCBI Name	`LOC130992466`
原始查询	`SmilChr07G001300`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	auxin-responsive protein IAA27-like
产物	auxin-responsive protein IAA27-like
Arabidopsis	`AT4G29080` (PAP2) phytochrome-associated protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:829029] identity=53.7; qcov=1.05; evalue=3.02e-98; confidence=high
Rice	`Os05g0230700` (OsIAA17) - identity=49.4; qcov=1.01; evalue=6.43e-70; confidence=high
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF02309 (AUX_IAA)
InterPro	-
eggNOG	-
NR	GeneID:130992466

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773086.1`
2	Chromosome	染色体	0.00000	`XP_057773086.1`
3	Centromere	着丝粒	0.00000	`XP_057773086.1`
4	Chromatin	染色质	0.00000	`XP_057773086.1`
5	Telomere	端粒	0.00000	`XP_057773086.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:9974904`	`G`	`GC`	1bp_insertion	frameshift_variant	3	A3,B80,D5
`Chr7:9974904`	`G`	`GC`	1bp_insertion	CDS_variant	3	A3,B80,D5
`Chr7:9975166`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr7:9975208`	`A`	`ATT`	2bp_insertion	frameshift_variant	1	B10
`Chr7:9975208`	`A`	`ATT`	2bp_insertion	CDS_variant	1	B10
`Chr7:9975218`	`TGG`	`T`	2bp_deletion	frameshift_variant	1	B10
`Chr7:9975218`	`TGG`	`T`	2bp_deletion	CDS_variant	1	B10
`Chr7:9975229`	`AAG`	`A`	2bp_deletion	frameshift_variant	1	B10
`Chr7:9975229`	`AAG`	`A`	2bp_deletion	CDS_variant	1	B10
`Chr7:9975234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B10,B84,C42,C57
`Chr7:9975255`	`GCC`	`G`	2bp_deletion	frameshift_variant	4	A7,B10,C42,C57
`Chr7:9975255`	`GCC`	`G`	2bp_deletion	CDS_variant	4	A7,B10,C42,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773086.1

318 aa

159

318

AUX_IAA

PF02309 AUX_IAA 45-297 aa

XP_057773087.1

308 aa

154

308

AUX_IAA

PF02309 AUX_IAA 45-299 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773086.1`	Pfam	`PF02309`	AUX_IAA	Family	45	297	5.6e-84	282.1	AUX/IAA family
`XP_057773087.1`	Pfam	`PF02309`	AUX_IAA	Family	45	299	5.9e-86	288.6	AUX/IAA family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917104.1
GCAGCAGCGAGGAGATAACAAAGAATTTTATTTTGTAGAATATAATTAGTGTTTGAAGAAAAGCAGAGTAAAAGTATATATTATTTCCCCCAAAACATTTATGAGCTTTAAGCAATTATGATATCAAAGCCATGATTATTTCCCTCCCAAAAGAGAAAAAGAAAAATAAAAAAGGCTACAGAAAGGCCAAAGAAGCTTCTTTTCTGCATCAACAAAAACCAGACCTCTCTTTTTTGAGGCACAAGAACAACTCTCTCTCC...

XM_057917103.1
AAGTATATATTATTTCCCCCAAAACATTTATGAGCTTTAAGCAATTATGATATCAAAGCCATGATTATTTCCCTCCCAAAAGAGAAAAAGAAAAATAAAAAAGGCTACAGAAAGGCCAAAGAAGCTTCTTTTCTGCATCAACAAAAACCAGACCTCTCTTTTTTGAGGCACAAGAACAACTCTCTCTCCCTCTCTACAAACTCATCCTCCTCCTCTAGCTCTCTCTTGCTCACTCTCTGAAACAATTAATTCGCCAAAAT...

CDS

2 records

下载 CDS FASTA

LOC130992466
ATGTCTATACCTCAAGAGCATGACTACATAGGGCTGTCGGAGCCCCTGCCCTCGGAGAAAAGCTCTGATAAAATGGCGGCGGCGCCGTCTCCTTCCTCGAATGACGAGAGAAATAGTGTTTTCAATCTTAAGGAGACCGAGCTCCGGCTGGGATTGCCGGGGTCGGAGGCGCCGGAGAGGAAGGGCGGAATTGGAATTGGGGTTTCTCTCTTTGGGAAAGATTTGAAGGATGAGAGCAAGTGCGTGAAAAGTTTCGTTTC...

Protein

2 records

下载 Protein FASTA

XP_057773086.1
MSIPQEHDYIGLSEPLPSEKSSDKMAAAPSPSSNDERNSVFNLKETELRLGLPGSEAPERKGGIGIGVSLFGKDLKDESKCVKSFVSGAKRGFSDAINGAGKWGLSINGESGADLMKNGGLNCSNESSVKQEIPSVKPVAESKSEAANTAPASKAQVVGWPPIPSFRKSTLATNIPKKDDVGGKSGSGCLYVKVSMDGAPYLRKIDLKTYCSYAEISSALEKMFSCFTIGQCGQGLAAKEHLSESHLMDLLHGSEYVLTY...

XP_057773087.1
MSIPQEHDYIGLSEPLPSEKSSDKMAAAPSPSSNDERNSVFNLKETELRLGLPGSEAPERKGGIGIGVSLFGKDLKDESKCVKSFVSGAKRGFSDAINGAGKWGLSINGESGADLMKNGGLNCSNESSVKQEIPSVKPVAESKSEAANTAPASKAQVVGWPPIPSFRKSTLATNIPKKDDVGGKSGSGCLYVKVSMDGAPYLRKIDLKTYCSYAEISSALEKMFSCFTIGQCGQGLAAKEHLSESHLMDLLHGSEYVLTY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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