当前解析结果
SmilChr07G001303| 统一新 Gene ID | SmilChr07G001303 |
|---|---|
| 名称 | SmilChr07G001303 |
| 描述 | transcription factor bHLH68-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 10007957 - 10012295 / + |
| NCBI Gene ID | LOC130992467 |
|---|---|
| GeneID | 130992467 |
| locus_tag | - |
| NCBI Name | LOC130992467 |
| 原始查询 | SmilChr07G001303 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor bHLH68-like |
| 产物 | transcription factor bHLH68-like |
| Arabidopsis | AT4G29100 (AT4G29100)basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829031] identity=47; qcov=0.81; evalue=2.42e-37; confidence=medium |
| Rice | Os05g0228400 (OsbHLH073)- identity=45.2; qcov=0.867; evalue=2.24e-46; confidence=medium |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992467 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773088.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057773088.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057773088.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057773088.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057773088.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:10008354 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr7:10008357 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,B4 |
Chr7:10008396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,B99 |
Chr7:10008735 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C85 |
Chr7:10008735 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C85 |
Chr7:10008796 |
CA |
C |
1bp_deletion | frameshift_variant | 62 | A11,A16,A19,A20,A22,A23,A4,A6,A8,B106,B119,B120,B127,B129,B135,B136,B140,B15,B16,B18,B19,B23,B24,B25,B26,B32,B35,B38,B39,B42,B50,B54,B60,B62,B64,B79,B86,B9,B91,B94,B99,C1,C10,C13,C19,C22,C27,C28,C41,C50,C53,C57,C61,C62,C71,C74,C8,C80,D2,D6,D8,D9 |
Chr7:10012069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B60,C15,C7 |
Chr7:10012075 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。