Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001307

染色体: Chr07 坐标: 10035001-10039819 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001307
名称SmilChr07G001307
描述probable plastidic glucose transporter 2
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向10035001 - 10039819 / -

ID 对照

NCBI Gene IDLOC130992472
GeneID130992472
locus_tag-
NCBI NameLOC130992472
原始查询SmilChr07G001307

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable plastidic glucose transporter 2
产物probable plastidic glucose transporter 2
ArabidopsisAT1G79820 (SGB1)
Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844321]
identity=66.7; qcov=0.996; evalue=0; confidence=high
RiceOs02g0274900 (P0413A11.38-1)
-
identity=66.1; qcov=0.971; evalue=0; confidence=high
GOGO:0015149 (hexose transmembrane transporter activity); GO:0015749 (monosaccharide transmembrane transport); GO:0016020 (membrane)
KEGG-
PfamPF00083 (Sugar_tr); PF07690 (MFS_1)
InterPro-
eggNOG-
NRGeneID:130992472

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole 液泡 1.00000 XP_057773103.1
2 Vacuole membrane 液泡膜 1.00000 XP_057773103.1
3 Nucleus 细胞核 0.00000 XP_057773103.1
4 Chromosome 染色体 0.00000 XP_057773103.1
5 Centromere 着丝粒 0.00000 XP_057773103.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:10035754 G A EMS_canonical_SNV CDS_variant 1 D11
Chr7:10035764 C T EMS_canonical_SNV CDS_variant 1 C42
Chr7:10035988 C T EMS_canonical_SNV CDS_variant 1 D10
Chr7:10036823 G A EMS_canonical_SNV CDS_variant 2 B117,C2
Chr7:10038374 G A EMS_canonical_SNV CDS_variant 1 B117

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057773103.1
489 aa
N
1
244
489
Sugar_tr
MFS_1
C
PF00083 Sugar_tr 52-483 aa PF07690 MFS_1 57-398 aa
XP_057773104.1
489 aa
N
1
244
489
Sugar_tr
MFS_1
C
PF00083 Sugar_tr 52-483 aa PF07690 MFS_1 57-398 aa
XP_057773105.1
489 aa
N
1
244
489
Sugar_tr
MFS_1
C
PF00083 Sugar_tr 52-483 aa PF07690 MFS_1 57-398 aa
XP_057773106.1
489 aa
N
1
244
489
Sugar_tr
MFS_1
C
PF00083 Sugar_tr 52-483 aa PF07690 MFS_1 57-398 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057773103.1 Pfam PF00083 Sugar_tr Family 52 483 4e-93 313.5 Sugar (and other) transporter
XP_057773103.1 Pfam PF07690 MFS_1 Family 57 398 1.3e-24 87.6 Major Facilitator Superfamily
XP_057773104.1 Pfam PF00083 Sugar_tr Family 52 483 4e-93 313.5 Sugar (and other) transporter
XP_057773104.1 Pfam PF07690 MFS_1 Family 57 398 1.3e-24 87.6 Major Facilitator Superfamily
XP_057773105.1 Pfam PF00083 Sugar_tr Family 52 483 4e-93 313.5 Sugar (and other) transporter
XP_057773105.1 Pfam PF07690 MFS_1 Family 57 398 1.3e-24 87.6 Major Facilitator Superfamily
XP_057773106.1 Pfam PF00083 Sugar_tr Family 52 483 5.4e-93 313.0 Sugar (and other) transporter
XP_057773106.1 Pfam PF07690 MFS_1 Family 57 398 8.1e-25 88.2 Major Facilitator Superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057917121.1
CTTAAACTACACTCCCCTCTCTCACTCCACCACCTCCACCTGCGCTATTGCCCACCGCATTCTCACTCAATAAACTCAAAGCCCAAGCTCGCGGCGCACGTTAACTATCCCCGTCATCCAGCTTCTTCTCGATATACTCTCGATCAATTCACCCGCTTTATTCTCGAATTTCATTCGGCTGTCTTCGCCGCCGAGCATTGCCAGTAGAATTGAGGTATGCGAGGACGCCACAGTGAAACCTTCTTGGTGCACAAGCGTGT...
XM_057917122.1
CTTAAACTACACTCCCCTCTCTCACTCCACCACCTCCACCTGCGCTATTGCCCACCGCATTCTCACTCAATAAACTCAAAGCCCAAGCTCGCGGCGCACGTTAACTATCCCCGTCATCCAGCTTCTTCTCGATATACTCTCGATCAATTCACCCGCTTTATTCTCGAATTTCATTCGGCTGTCTTCGCCGCCGAGCATTGCCAGAGACCACTTTGATCTCTACAGTAGAATTGAGGTATGCGAGGACGCCACAGTGAAAC...

CDS

4 records

下载 CDS FASTA
LOC130992472
ATGCGAGGACGCCACAGTGAAACCTTCTTGGTGCACAAGCGTGTATCGTCCAAGGAACATCTCAATGGATATGATTATGATAGAGAAGGATTACTAGGTCACTCACAAAGTGGTCATATTAGCAATCCTTCATGGAAGCGTCCTTTGCCACATGTTCTGGTGGCAACTATCTCGTCATTCTTATTTGGCTATCATCTCGGGGTTGTTAATGACACGTTGGAGAGCATCTCTGTGGAATTAGGCTTCAGCGGCAGTACTCT...
LOC130992472
ATGCGAGGACGCCACAGTGAAACCTTCTTGGTGCACAAGCGTGTATCGTCCAAGGAACATCTCAATGGATATGATTATGATAGAGAAGGATTACTAGGTCACTCACAAAGTGGTCATATTAGCAATCCTTCATGGAAGCGTCCTTTGCCACATGTTCTGGTGGCAACTATCTCGTCATTCTTATTTGGCTATCATCTCGGGGTTGTTAATGACACGTTGGAGAGCATCTCTGTGGAATTAGGCTTCAGCGGCAGTACTCT...

Protein

4 records

下载 Protein FASTA
XP_057773103.1
MRGRHSETFLVHKRVSSKEHLNGYDYDREGLLGHSQSGHISNPSWKRPLPHVLVATISSFLFGYHLGVVNDTLESISVELGFSGSTLAEGLVVSTCLAGALLGSLFSGWISDGLGRRRAFQLCALPMIIGASMSATTSSLEGMLLGRFFVGTGMGLGPPVAALYVSEVSPAFVRGTYGSFTQIATCLGLMTALLIGIPAKNDPSWWRACFWVSTIPAALLAILMEFSTESPHWLFKRGRIAQTEEELERLFGASHVKSAM...
XP_057773104.1
MRGRHSETFLVHKRVSSKEHLNGYDYDREGLLGHSQSGHISNPSWKRPLPHVLVATISSFLFGYHLGVVNDTLESISVELGFSGSTLAEGLVVSTCLAGALLGSLFSGWISDGLGRRRAFQLCALPMIIGASMSATTSSLEGMLLGRFFVGTGMGLGPPVAALYVSEVSPAFVRGTYGSFTQIATCLGLMTALLIGIPAKNDPSWWRACFWVSTIPAALLAILMEFSTESPHWLFKRGRIAQTEEELERLFGASHVKSAM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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