Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001310`

染色体: Chr07 坐标: 10096021-10102481 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001310`
名称	SmilChr07G001310
描述	homeobox-leucine zipper protein GLABRA 2
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	10096021 - 10102481 / `+`

ID 对照

NCBI Gene ID	`LOC130992475`
GeneID	`130992475`
locus_tag	`-`
NCBI Name	`LOC130992475`
原始查询	`SmilChr07G001310`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox-leucine zipper protein GLABRA 2
产物	homeobox-leucine zipper protein GLABRA 2
Arabidopsis	`AT1G79840` (GL2) HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:844323] identity=57.6; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0760800` (Roc9(t)) - identity=49.4; qcov=1.09; evalue=0; confidence=high
GO	GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0003677 (DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00046 (Homeodomain); PF01852 (START); PF05920 (Homeobox_KN); PF25797 (PDF2_C)
InterPro	-
eggNOG	-
NR	GeneID:130992475

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773107.1`
2	Chromosome	染色体	0.00000	`XP_057773107.1`
3	Centromere	着丝粒	0.00000	`XP_057773107.1`
4	Chromatin	染色质	0.00000	`XP_057773107.1`
5	Telomere	端粒	0.00000	`XP_057773107.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:10096205`	`TTC`	`T`	2bp_deletion	frameshift_variant	1	A14
`Chr7:10096205`	`TTC`	`T`	2bp_deletion	CDS_variant	1	A14
`Chr7:10096226`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:10096387`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	B137,B3,B70,C33,C6,C79,C8
`Chr7:10096401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr7:10096416`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A10,B101,C50,C73,D6
`Chr7:10096469`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,A9,C46
`Chr7:10096505`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr7:10096587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B4,B69
`Chr7:10099055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:10099130`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr7:10099294`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773107.1

754 aa

377

754

Homeodomain

Homeobox_KN

START

PDF2_C

PF00046 Homeodomain 95-150 aa PF05920 Homeobox_KN 116-147 aa PF01852 START 268-490 aa PF25797 PDF2_C 513-752 aa

XP_057773108.1

751 aa

376

751

Homeodomain

Homeobox_KN

START

PDF2_C

PF00046 Homeodomain 95-150 aa PF05920 Homeobox_KN 116-147 aa PF01852 START 268-490 aa PF25797 PDF2_C 510-749 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773107.1`	Pfam	`PF00046`	Homeodomain	Domain	95	150	5.6e-19	68.4	Homeodomain
`XP_057773107.1`	Pfam	`PF05920`	Homeobox_KN	Family	116	147	1.7e-05	25.3	Homeobox KN domain
`XP_057773107.1`	Pfam	`PF01852`	START	Domain	268	490	2.9e-47	161.4	START domain
`XP_057773107.1`	Pfam	`PF25797`	PDF2_C	Domain	513	752	8.1e-103	343.4	PDF2-like, C-terminal domain
`XP_057773108.1`	Pfam	`PF00046`	Homeodomain	Domain	95	150	5.5e-19	68.4	Homeodomain
`XP_057773108.1`	Pfam	`PF05920`	Homeobox_KN	Family	116	147	1.7e-05	25.3	Homeobox KN domain
`XP_057773108.1`	Pfam	`PF01852`	START	Domain	268	490	2.9e-47	161.5	START domain
`XP_057773108.1`	Pfam	`PF25797`	PDF2_C	Domain	510	749	8.1e-103	343.4	PDF2-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917124.1
ATGAACAGACCCCACCGTCTTCTTCACATCACAAGCCCACGAAAGGAGCTTCATATTTAAAATTAAAAAAGAAAAAAAGAAAAAAGAGTAGCTGATAAAAACACAAAGCAAGTTAATTAAGAAAGCAATTTATCATCGATTTGGCAAATGCAATGAGTGTAGATATGTCGTCCAATCTCCCCCCTTCTCAGCCCAGAGATCTTTTCGCCTCTGCTCCAGCTCTCTCACTCTCTCTTGCTGGTATTTTCCAAGGTGGCGGA...

XM_057917125.1
TGAACAGACCCCACCGTCTTCTTCACATCACAAGCCCACGAAAGGAGCTTCATATTTAAAATTAAAAAAGAAAAAAAGAAAAAAGAGTAGCTGATAAAAACACAAAGCAAGTTAATTAAGAAAGCAATTTATCATCGATTTGGCAAATGCAATGAGTGTAGATATGTCGTCCAATCTCCCCCCTTCTCAGCCCAGAGATCTTTTCGCCTCTGCTCCAGCTCTCTCACTCTCTCTTGCTGGTATTTTCCAAGGTGGCGGAG...

CDS

2 records

下载 CDS FASTA

LOC130992475
ATGAGTGTAGATATGTCGTCCAATCTCCCCCCTTCTCAGCCCAGAGATCTTTTCGCCTCTGCTCCAGCTCTCTCACTCTCTCTTGCTGGTATTTTCCAAGGTGGCGGAGGCGAGGTGGAGGAGGGGGAGGGCGGGATCGGCGGCGACGCGGTGGAGATAAGCAGCGAGAATTCCGGCGCCGGCAAGTCGCGGTCGGACGACGACTACGAGTTGGCGGCGGAGGGATTAATGGATGATGAAGATGAAGATGAAAATGACGG...

Protein

2 records

下载 Protein FASTA

XP_057773107.1
MSVDMSSNLPPSQPRDLFASAPALSLSLAGIFQGGGGEVEEGEGGIGGDAVEISSENSGAGKSRSDDDYELAAEGLMDDEDEDENDGGGGKKRKRKKYHRHTPRQIREMEALFKESPHPDEKQRLELSKQLGLHPRQVKFWFQNRRTQIKAIQERHENSLLKSEIDKLRDENKALRESIKTQSCLNKDAAAAAATTTEGQKLRLENARLKAEVEKLKSVIGKHPHAHGTSPRSSSHSSGNDQENRSSFELFAANSGLEKA...

XP_057773108.1
MSVDMSSNLPPSQPRDLFASAPALSLSLAGIFQGGGGEVEEGEGGIGGDAVEISSENSGAGKSRSDDDYELAAEGLMDDEDEDENDGGGGKKRKRKKYHRHTPRQIREMEALFKESPHPDEKQRLELSKQLGLHPRQVKFWFQNRRTQIKAIQERHENSLLKSEIDKLRDENKALRESIKTQSCLNKDAAAAAATTTEGQKLRLENARLKAEVEKLKSVIGKHPHAHGTSPRSSSHSSGNDQENRSSFELFAANSGLEKA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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