当前解析结果
SmilChr07G001329| 统一新 Gene ID | SmilChr07G001329 |
|---|---|
| 名称 | SmilChr07G001329 |
| 描述 | uncharacterized SmilChr07G001329 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 10226405 - 10227366 / - |
| NCBI Gene ID | LOC130992493 |
|---|---|
| GeneID | 130992493 |
| locus_tag | - |
| NCBI Name | LOC130992493 |
| 原始查询 | SmilChr07G001329 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Avr9/Cf-9 rapidly elicited protein [Source:NCBI gene (formerly Entrezgene);Acc:841644]; symbol=AT1G52140; hit=AT1G52140; species=arabidopsis; confidence=low |
| 产物 | Avr9/Cf-9 rapidly elicited protein [Source:NCBI gene (formerly Entrezgene);Acc:841644]; symbol=AT1G52140; hit=AT1G52140; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G52140 (AT1G52140)Avr9/Cf-9 rapidly elicited protein [Source:NCBI gene (formerly Entrezgene);Acc:841644] identity=50; qcov=0.411; evalue=1.26e-11; confidence=low |
| Rice | Os06g0554600- identity=45.5; qcov=0.39; evalue=1.59e-09; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992493 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057773126.1 |
| 2 | Mitochondrion | 线粒体 | 0.20000 | XP_057773126.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057773126.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057773126.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057773126.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:10226692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr7:10226796 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr7:10226798 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr7:10226822 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | A25 |
Chr7:10226822 |
GC |
G |
1bp_deletion | CDS_variant | 1 | A25 |
Chr7:10226876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr7:10226902 |
G |
GT |
1bp_insertion | frameshift_variant | 46 | A19,A20,A25,A9,B10,B104,B105,B109,B124,B128,B130,B15,B19,B21,B27,B29,B62,B7,B73,B91,C11,C12,C15,C18,C2,C20,C25,C27,C30,C31,C34,C37,C38,C42,C46,C47,C53,C65,C69,C72,C75,C77,C81,D1,D11,D5 |
Chr7:10226947 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | B13 |
Chr7:10226947 |
TGA |
T |
2bp_deletion | CDS_variant | 1 | B13 |
Chr7:10226981 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,B21,C26,C5 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。