Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001332`

染色体: Chr07 坐标: 10290716-10296401 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001332`
名称	SmilChr07G001332
描述	casein kinase 1-like protein HD16
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	10290716 - 10296401 / `+`

ID 对照

NCBI Gene ID	`LOC130992495`
GeneID	`130992495`
locus_tag	`-`
NCBI Name	`LOC130992495`
原始查询	`SmilChr07G001332`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	casein kinase 1-like protein HD16
产物	casein kinase 1-like protein HD16
Arabidopsis	`AT2G25760` (AT2G25760) Protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:817118] identity=74.8; qcov=0.962; evalue=0; confidence=high
Rice	`Os05g0200500` - identity=82.2; qcov=0.86; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006897 (endocytosis); GO:0007165 (signal transduction); GO:0018105 (peptidyl-serine phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF17667 (Pkinase_fungal); PF24289 (DUF7477)
InterPro	-
eggNOG	-
NR	GeneID:130992495

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773129.1`
2	Cytosol	细胞质基质	1.00000	`XP_057773130.1`
3	Cytoplasm	细胞质	0.80000	`XP_057773129.1`
4	Chromosome	染色体	0.00000	`XP_057773129.1`
5	Centromere	着丝粒	0.00000	`XP_057773129.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:10291513`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr7:10292409`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C61
`Chr7:10292409`	`TG`	`T`	1bp_deletion	CDS_variant	1	C61
`Chr7:10295270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr7:10295454`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C72,D10,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773129.1

710 aa

355

710

Pkinase

PK_Tyr_Ser-Thr

Pkinase_fungal

DUF7477

PF00069 Pkinase 143-377 aa PF07714 PK_Tyr_Ser-Thr 144-306 aa PF17667 Pkinase_fungal 249-354 aa PF24289 DUF7477 443-710 aa

XP_057773130.1

706 aa

353

706

Pkinase

PK_Tyr_Ser-Thr

Pkinase_fungal

DUF7477

PF00069 Pkinase 143-377 aa PF07714 PK_Tyr_Ser-Thr 144-306 aa PF17667 Pkinase_fungal 249-354 aa PF24289 DUF7477 438-706 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773129.1`	Pfam	`PF00069`	Pkinase	Domain	143	377	3.3e-16	60.2	Protein kinase domain
`XP_057773129.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	144	306	1.1e-06	28.9	Protein tyrosine and serine/threonine kinase
`XP_057773129.1`	Pfam	`PF17667`	Pkinase_fungal	Domain	249	354	2e-06	27.6	Fungal protein kinase
`XP_057773129.1`	Pfam	`PF24289`	DUF7477	Repeat	443	710	7e-163	540.9	Domain of unknown function (DUF7477)
`XP_057773130.1`	Pfam	`PF00069`	Pkinase	Domain	143	377	3.3e-16	60.2	Protein kinase domain
`XP_057773130.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	144	306	1.1e-06	28.9	Protein tyrosine and serine/threonine kinase
`XP_057773130.1`	Pfam	`PF17667`	Pkinase_fungal	Domain	249	354	1.9e-06	27.6	Fungal protein kinase
`XP_057773130.1`	Pfam	`PF24289`	DUF7477	Repeat	438	706	5.6e-163	541.2	Domain of unknown function (DUF7477)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917146.1
ATGATTCGTTGAATCGACGGTGGAGATCTATTAAGAGCAGCAAAAATGTTTTTTTTATTTTATTTCATTAAATCTATACATTTCAGAAATGTACGTACATACACAATCGCCTCGCATCCCCTCTCTCGCGAAACCAAAATCGACTACTGTTGTTTCCGATTCTATCTCTCTCTAAAATCCAATCACTTTCTTTCTCTATTAGATCCCTAAATTTTTGCACTCCGTTTCAAAACCCTAGCGATCGAGCAGCTGATCAATTC...

XM_057917147.1
ATGATTCGTTGAATCGACGGTGGAGATCTATTAAGAGCAGCAAAAATGTTTTTTTTATTTTATTTCATTAAATCTATACATTTCAGAAATGTACGTACATACACAATCGCCTCGCATCCCCTCTCTCGCGAAACCAAAATCGACTACTGTTGTTTCCGATTCTATCTCTCTCTAAAATCCAATCACTTTCTTTCTCTATTAGATCCCTAAATTTTTGCACTCCGTTTCAAAACCCTAGCGATCGAGCAGCTGATCAATTC...

CDS

2 records

下载 CDS FASTA

LOC130992495
ATGCCGGTGCTGCGTGGCGGAGTGCGCAGAGGCCGGAGAGGGAACCAGAAGCAGGACCAGCCACTGCCGGATAAGGACGGCGACAACGTCGGTAAGAATCAGAATCAGGACAATAAGAGAAGTAGGCAGCCGGCAGAGGAAAACGCTGCGATAGCTACGCGTACGAGGAGGAGGAGAGCGGCGGCGGCTGCAGTTGCGGCACCTGTTGATGACAAAATAGTTACTGTAGTGGAAGCGGCAGCAGCACCTGAAGTCAAGGA...

Protein

2 records

下载 Protein FASTA

XP_057773129.1
MPVLRGGVRRGRRGNQKQDQPLPDKDGDNVGKNQNQDNKRSRQPAEENAAIATRTRRRRAAAAAVAAPVDDKIVTVVEAAAAPEVKEVEEDKRVSEEEREEVGEKSMDEYDSGGKSPDKANGADDDLPSPLPEKVQVGGSPTYKLEKKLGKGGFGQVYVGRRITGGNVNERTGPGAIEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDIWNNNSHSMSVEMVACIAIESIS...

XP_057773130.1
MPVLRGGVRRGRRGNQKQDQPLPDKDGDNVGKNQNQDNKRSRQPAEENAAIATRTRRRRAAAAAVAAPVDDKIVTVVEAAAAPEVKEVEEDKRVSEEEREEVGEKSMDEYDSGGKSPDKANGADDDLPSPLPEKVQVGGSPTYKLEKKLGKGGFGQVYVGRRITGGNVNERTGPGAIEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDIWNNNSHSMSVEMVACIAIESIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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