Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001353`

染色体: Chr07 坐标: 10477176-10484417 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001353`
名称	SmilChr07G001353
描述	nuclear poly(A) polymerase 4-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	10477176 - 10484417 / `-`

ID 对照

NCBI Gene ID	`LOC130992516`
GeneID	`130992516`
locus_tag	`-`
NCBI Name	`LOC130992516`
原始查询	`SmilChr07G001353`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear poly(A) polymerase 4-like
产物	nuclear poly(A) polymerase 4-like
Arabidopsis	`AT2G25850` (PAPS2) poly(A) polymerase 2 [Source:NCBI gene (formerly Entrezgene);Acc:817127] identity=50; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0227400` - identity=63.4; qcov=0.627; evalue=1.24e-166; confidence=high
GO	GO:0003723 (RNA binding); GO:0005634 (nucleus); GO:0006378 (GO:0006378); GO:1990817 (poly(A) RNA polymerase activity)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage))
Pfam	PF01909 (NTP_transf_2); PF04926 (PAP_RNA-bind); PF04928 (PAP_central); PF20750 (PAP_NTPase)
InterPro	-
eggNOG	-
NR	GeneID:130992516

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773155.1`
2	Nucleoplasm	核质	0.80000	`XP_057773160.1`
3	Cytoplasm	细胞质	0.40000	`XP_057773155.1`
4	Nuclear body	核内小体	0.40000	`XP_057773160.1`
5	Cytosol	细胞质基质	0.20000	`XP_057773155.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:10478424`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr7:10478495`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:10478760`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B82,B84
`Chr7:10478776`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:10478857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C31,C61
`Chr7:10478875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C3,C51,D1
`Chr7:10479107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr7:10479652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B41,C10,C42
`Chr7:10479768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr7:10479836`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B94
`Chr7:10479836`	`CT`	`C`	1bp_deletion	CDS_variant	1	B94
`Chr7:10480758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B82,B84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773155.1

753 aa

376

753

PAP_NTPase

NTP_transf_2

PAP_central

PAP_RNA-bind

PF20750 PAP_NTPase 28-222 aa PF01909 NTP_transf_2 89-177 aa PF04928 PAP_central 227-371 aa PF04926 PAP_RNA-bind 375-433 aa PF04926 PAP_RNA-bind 432-508 aa

XP_057773157.1

751 aa

376

751

PAP_NTPase

NTP_transf_2

PAP_central

PAP_RNA-bind

PF20750 PAP_NTPase 28-222 aa PF01909 NTP_transf_2 89-177 aa PF04928 PAP_central 227-371 aa PF04926 PAP_RNA-bind 375-433 aa PF04926 PAP_RNA-bind 432-508 aa

XP_057773158.1

750 aa

375

750

PAP_NTPase

NTP_transf_2

PAP_central

PAP_RNA-bind

PF20750 PAP_NTPase 28-222 aa PF01909 NTP_transf_2 89-177 aa PF04928 PAP_central 227-371 aa PF04926 PAP_RNA-bind 375-433 aa PF04926 PAP_RNA-bind 432-508 aa

XP_057773159.1

748 aa

374

748

PAP_NTPase

NTP_transf_2

PAP_central

PAP_RNA-bind

PF20750 PAP_NTPase 28-222 aa PF01909 NTP_transf_2 89-177 aa PF04928 PAP_central 227-371 aa PF04926 PAP_RNA-bind 375-433 aa PF04926 PAP_RNA-bind 432-508 aa

XP_057773160.1

601 aa

300

601

PAP_NTPase

PAP_central

PAP_RNA-bind

PF20750 PAP_NTPase 37-70 aa PF04928 PAP_central 75-219 aa PF04926 PAP_RNA-bind 223-281 aa PF04926 PAP_RNA-bind 280-356 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773155.1`	Pfam	`PF20750`	PAP_NTPase	Domain	28	222	7.1e-73	245.3	Poly(A) polymerase nucleotidyltransferase domain
`XP_057773155.1`	Pfam	`PF01909`	NTP_transf_2	Domain	89	177	3.7e-10	40.8	Nucleotidyltransferase domain
`XP_057773155.1`	Pfam	`PF04928`	PAP_central	Domain	227	371	6.3e-67	224.6	Poly(A) polymerase central domain
`XP_057773155.1`	Pfam	`PF04926`	PAP_RNA-bind	Domain	375	433	4.3e-19	69.6	Poly(A) polymerase predicted RNA binding domain
`XP_057773155.1`	Pfam	`PF04926`	PAP_RNA-bind	Domain	432	508	4.3e-19	69.6	Poly(A) polymerase predicted RNA binding domain
`XP_057773157.1`	Pfam	`PF20750`	PAP_NTPase	Domain	28	222	7.1e-73	245.3	Poly(A) polymerase nucleotidyltransferase domain
`XP_057773157.1`	Pfam	`PF01909`	NTP_transf_2	Domain	89	177	3.7e-10	40.8	Nucleotidyltransferase domain
`XP_057773157.1`	Pfam	`PF04928`	PAP_central	Domain	227	371	6.3e-67	224.6	Poly(A) polymerase central domain
`XP_057773157.1`	Pfam	`PF04926`	PAP_RNA-bind	Domain	375	433	4.3e-19	69.6	Poly(A) polymerase predicted RNA binding domain
`XP_057773157.1`	Pfam	`PF04926`	PAP_RNA-bind	Domain	432	508	4.3e-19	69.6	Poly(A) polymerase predicted RNA binding domain
`XP_057773158.1`	Pfam	`PF20750`	PAP_NTPase	Domain	28	222	7.1e-73	245.3	Poly(A) polymerase nucleotidyltransferase domain
`XP_057773158.1`	Pfam	`PF01909`	NTP_transf_2	Domain	89	177	3.7e-10	40.8	Nucleotidyltransferase domain
`XP_057773158.1`	Pfam	`PF04928`	PAP_central	Domain	227	371	6.3e-67	224.6	Poly(A) polymerase central domain
`XP_057773158.1`	Pfam	`PF04926`	PAP_RNA-bind	Domain	375	433	4.3e-19	69.6	Poly(A) polymerase predicted RNA binding domain
`XP_057773158.1`	Pfam	`PF04926`	PAP_RNA-bind	Domain	432	508	4.3e-19	69.6	Poly(A) polymerase predicted RNA binding domain
`XP_057773159.1`	Pfam	`PF20750`	PAP_NTPase	Domain	28	222	7e-73	245.4	Poly(A) polymerase nucleotidyltransferase domain
`XP_057773159.1`	Pfam	`PF01909`	NTP_transf_2	Domain	89	177	3.7e-10	40.8	Nucleotidyltransferase domain
`XP_057773159.1`	Pfam	`PF04928`	PAP_central	Domain	227	371	6.3e-67	224.6	Poly(A) polymerase central domain
`XP_057773159.1`	Pfam	`PF04926`	PAP_RNA-bind	Domain	375	433	4.3e-19	69.6	Poly(A) polymerase predicted RNA binding domain
`XP_057773159.1`	Pfam	`PF04926`	PAP_RNA-bind	Domain	432	508	4.3e-19	69.6	Poly(A) polymerase predicted RNA binding domain
`XP_057773160.1`	Pfam	`PF20750`	PAP_NTPase	Domain	37	70	1.1e-09	39.1	Poly(A) polymerase nucleotidyltransferase domain
`XP_057773160.1`	Pfam	`PF04928`	PAP_central	Domain	75	219	4.4e-67	225.1	Poly(A) polymerase central domain
`XP_057773160.1`	Pfam	`PF04926`	PAP_RNA-bind	Domain	223	281	2.4e-19	70.4	Poly(A) polymerase predicted RNA binding domain
`XP_057773160.1`	Pfam	`PF04926`	PAP_RNA-bind	Domain	280	356	2.4e-19	70.4	Poly(A) polymerase predicted RNA binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057917175.1
AAAATCTAATCGAAAAAGGAACAGCCTAGCGAGGAAAATAAAATCGGTGCGCCCCCCCAAAAATAAAGAAAAAAAAAAAAACAAATATCTTTGCCCAATATTAATTCGGATTTTCCAACTCAAATCGCCGCTGTTACTTCAACCGGCGGAGCCCATTACCCCCTTCAACTCGCTCTTCGAGAGCCCAAGTCGGCCCGATATTTCCCTCTCCGCGTCGGAATATGAGAGCTCCAGGCCTTATTTAATAGATCTATCACTTT...

XM_057917176.1
GAAAAAGGAACAGCCTAGCGAGGAAAATAAAATCGGTGCGCCCCCCCAAAAATAAAGAAAAAAAAAAAAACAAATATCTTTGCCCAATATTAATTCGGATTTTCCAACTCAAATCGCCGCTGTTACTTCAACCGGCGGAGCCCATTACCCCCTTCAACTCGCTCTTCGAGAGCCCAAGTCGGCCCGATATTTCCCTCTCCGCGTCGGAATATGAGAGCTCCAGGCCTTATTTAATAGATCTATCACTTTGATTTTCTCAA...

CDS

5 records

下载 CDS FASTA

LOC130992516
ATGGTTGGATCGGATAGTTTGAACTCATCGCCTTCTCTGTCGCCTCCGCCGGCAGAGAACAAGCAGCTGCCGAAGCAGTGGGGAGTGGCAAAGCCCTTGTCGCTAGCTGGGCCCATTGATGCGGATATTCAGAGGAACAGGGAGTTGGAGAAGTTTTTGGTAGAGTCGGAACTTTATGAGAGTGCAGAAGAATCTGCCAAAAGGGAAGCGGTTCTCGCACGACTTAAGCAGATTGTGAAAGATTGGGTTAAAGAGCTTAC...

Protein

5 records

下载 Protein FASTA

XP_057773155.1
MVGSDSLNSSPSLSPPPAENKQLPKQWGVAKPLSLAGPIDADIQRNRELEKFLVESELYESAEESAKREAVLARLKQIVKDWVKELTRLRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYVNREEDFFFVLHNILAEMEEVSELHPVPDAHVPVMKFKLDGISIDLLYASISLLVVPDDLDISNISVLYDIDEPTVRSLNGCRVADQILKLVPNVENFRITLQCLKFWAKRRGVYSNVMGFLGGVNWAIL...

XP_057773157.1
MVGSDSLNSSPSLSPPPAENKQLPKQWGVAKPLSLAGPIDADIQRNRELEKFLVESELYESAEESAKREAVLARLKQIVKDWVKELTRLRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYVNREEDFFFVLHNILAEMEEVSELHPVPDAHVPVMKFKLDGISIDLLYASISLLVVPDDLDISNISVLYDIDEPTVRSLNGCRVADQILKLVPNVENFRITLQCLKFWAKRRGVYSNVMGFLGGVNWAIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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