Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001375`

染色体: Chr07 坐标: 10674834-10678449 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001375`
名称	SmilChr07G001375
描述	uncharacterized SmilChr07G001375
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	10674834 - 10678449 / `-`

ID 对照

NCBI Gene ID	`LOC130992646`
GeneID	`130992646`
locus_tag	`-`
NCBI Name	`LOC130992646`
原始查询	`SmilChr07G001375`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=weak
产物	K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G31150` (AT1G31150) K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000] identity=24.4; qcov=0.656; evalue=1.12e-09; confidence=weak
Rice	`-` -
GO	-
KEGG	-
Pfam	PF09331 (DUF1985); PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:130992646

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773355.1`
2	Cytoplasm	细胞质	0.80000	`XP_057773354.1`
3	Chromosome	染色体	0.00000	`XP_057773354.1`
4	Centromere	着丝粒	0.00000	`XP_057773354.1`
5	Chromatin	染色质	0.00000	`XP_057773354.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:10675947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B25,B77,B8,C16
`Chr7:10675951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B88,B99,C33,C7
`Chr7:10676086`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B88,C33,C7
`Chr7:10676150`	`TA`	`T`	1bp_deletion	frameshift_variant	133	A1,A13,A14,A18,A19,A2,A21,A22,A23,A3,A4,A9,B102,B103,B105,B106,B107,B108,B109,B11,B112,B113,B114,B115,B119,B121,B123,B124,B133,B135,B136,B137,B138,B140,B15,B17,B23,B25,B27,B28,B29,B31,B33,B34,B35,B37,B4,B46,B47,B50,B51,B53,B56,B57,B58,B59,B64,B68,B7,B71,B75,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B87,B94,B95,B96,B97,B99,C10,C13,C15,C16,C17,C19,C2,C21,C26,C29,C30,C32,C33,C34,C36,C37,C38,C42,C43,C44,C45,C46,C47,C48,C49,C5,C51,C52,C53,C54,C56,C58,C59,C61,C62,C63,C68,C7,C70,C72,C73,C77,C78,C79,C8,C81,C82,C83,C87,D1,D11,D2,D3,D4,D5,D9
`Chr7:10676167`	`TA`	`T`	1bp_deletion	frameshift_variant	134	A1,A13,A14,A18,A19,A2,A21,A22,A23,A3,A4,A6,A9,B102,B103,B105,B106,B107,B108,B109,B11,B112,B113,B114,B115,B119,B121,B123,B132,B133,B135,B136,B137,B138,B139,B140,B15,B17,B23,B25,B27,B28,B29,B31,B33,B34,B35,B37,B4,B46,B47,B51,B53,B56,B57,B58,B59,B64,B68,B7,B71,B75,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B94,B95,B96,B97,B99,C13,C15,C16,C17,C19,C2,C21,C26,C29,C30,C32,C33,C34,C36,C37,C38,C42,C43,C44,C45,C47,C48,C49,C5,C51,C52,C53,C54,C56,C58,C59,C61,C62,C63,C68,C7,C70,C72,C73,C77,C78,C79,C8,C81,C82,C83,C87,D1,D11,D2,D3,D4,D5,D7,D9
`Chr7:10676173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B62,B9,C30,C72
`Chr7:10676203`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr7:10676207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr7:10676282`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B134,C79,D3
`Chr7:10676286`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr7:10676306`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B62,B9,C30,C72
`Chr7:10676338`	`C`	`T`	EMS_canonical_SNV	stop_gained	42	A19,A21,A3,A6,B101,B117,B118,B123,B125,B13,B133,B139,B16,B21,B61,B63,B65,B67,B68,B70,B80,B81,B82,B83,B84,B86,C14,C26,C37,C39,C45,C50,C71,C73,C77,C78,C82,C83,C9,D4,D5,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773354.1

314 aa

157

314

DUF1985

DUF8566

PF09331 DUF1985 78-211 aa PF29561 DUF8566 86-233 aa

XP_057773355.1

297 aa

148

297

DUF1985

DUF8566

PF09331 DUF1985 78-211 aa PF29561 DUF8566 86-233 aa

XP_057773356.1

294 aa

147

294

DUF1985

DUF8566

PF09331 DUF1985 78-211 aa PF29561 DUF8566 86-233 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773354.1`	Pfam	`PF09331`	DUF1985	Family	78	211	3.2e-15	57.0	Domain of unknown function (DUF1985)
`XP_057773354.1`	Pfam	`PF29561`	DUF8566	Domain	86	233	2.6e-12	47.7	Domain of unknown function (DUF8566)
`XP_057773355.1`	Pfam	`PF09331`	DUF1985	Family	78	211	2.7e-15	57.3	Domain of unknown function (DUF1985)
`XP_057773355.1`	Pfam	`PF29561`	DUF8566	Domain	86	233	2.3e-12	47.8	Domain of unknown function (DUF8566)
`XP_057773356.1`	Pfam	`PF09331`	DUF1985	Family	78	211	2.6e-15	57.4	Domain of unknown function (DUF1985)
`XP_057773356.1`	Pfam	`PF29561`	DUF8566	Domain	86	233	2.3e-12	47.8	Domain of unknown function (DUF8566)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057917373.1
ATCTACACAACTTTACAAGAATTGATTCACCATATACCCACTTTAATTGATTCCTACACTACATATCCATATCCATTAAAGTATTATTCTTATTTAAAAATCTACACAAAAACGTCAATTCAAGATTTGGGGTGTCAGATAAAAGTACAATTTTATCTACCCAAGTGTCCCAAACATAAATTCTCTTAAAGTTCTTAAATTCATTTGTTTCTCTATATTTGTGTTTCCGCCTTGCACACGCCAAAACATTACTTCTACAT...

XM_057917372.1
ATCTACACAACTTTACAAGAATTGATTCACCATATACCCACTTTAATTGATTCCTACACTACATATCCATATCCATTAAAGTATTATTCTTATTTAAAAATCTACACAAAAACGTCAATTCAAGATTTGGGGTGTCAGATAAAAGTACAATTTTATCTACCCAAGTGTCCCAAACATAAATTCTCTTAAAGTTCTTAAATTCATTTGTTTCTCTATATTTGTGTTTCCGCCTTGCACACGCCAAAACATTACTTCTACAT...

CDS

3 records

下载 CDS FASTA

LOC130992646
ATGTCTGAACATGAAGATGTGGCTCCTGATTTTGTGAGGCCTAGTACGATCAATGTTCACTCGAATGTTAGCACGTACTATAGGATAGATTATTTGGCCATTGTTAAAAAGGCATTGCTTGATGCAGGTGGGCAACCGTTGCTTGATAGATTTTTAGGGGGTTGTTTTGGGCACTTTATTGATTTCAAGCCCGGTCCTAAGTGTGGTATGGCACTGCACTATGTCGTCTCTCGCCAAATACAATCGGACGATAATGGAAT...

Protein

3 records

下载 Protein FASTA

XP_057773354.1
MSEHEDVAPDFVRPSTINVHSNVSTYYRIDYLAIVKKALLDAGGQPLLDRFLGGCFGHFIDFKPGPKCGMALHYVVSRQIQSDDNGMWFFINGRKIYFSPKDYALITGLHFGSSNFDVIGDHHDVRNVKVFRTFCGGHQIRIAELVDTLNTFRIDDLDDSLHLRVAHVIVLYGMLLGYESDKYVASWIWAMVDDLDDFSRFPWGVYSYQTLSHYTYKCKPKKKYHFYGPVWALHIWSFEILSHLANEVGRLVDAVAHPRC...

XP_057773355.1
MSEHEDVAPDFVRPSTINVHSNVSTYYRIDYLAIVKKALLDAGGQPLLDRFLGGCFGHFIDFKPGPKCGMALHYVVSRQIQSDDNGMWFFINGRKIYFSPKDYALITGLHFGSSNFDVIGDHHDVRNVKVFRTFCGGHQIRIAELVDTLNTFRIDDLDDSLHLRVAHVIVLYGMLLGYESDKYVASWIWAMVDDLDDFSRFPWGVYSYQTLSHYTYKCKPKKKYHFYGPVWALHIWSFEILSHLANEVGRLVDAVAHPRC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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