当前解析结果
SmilChr07G001389| 统一新 Gene ID | SmilChr07G001389 |
|---|---|
| 名称 | SmilChr07G001389 |
| 描述 | uncharacterized SmilChr07G001389 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 10776046 - 10778155 / - |
| NCBI Gene ID | LOC130992576 |
|---|---|
| GeneID | 130992576 |
| locus_tag | - |
| NCBI Name | LOC130992576 |
| 原始查询 | SmilChr07G001389 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:834612]; symbol=AT5G45730; hit=AT5G45730; species=arabidopsis; confidence=low |
| 产物 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:834612]; symbol=AT5G45730; hit=AT5G45730; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G45730 (AT5G45730)Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:834612] identity=28.3; qcov=0.979; evalue=4.78e-40; confidence=low |
| Rice | Os07g0611200- identity=29.5; qcov=0.302; evalue=1.84e-13; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF03107 (C1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992576 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057773247.1 |
| 2 | Secreted | 分泌到胞外 | 0.20000 | XP_057773247.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057773247.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057773247.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057773247.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:10776091 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B34,D10 |
Chr7:10776098 |
CTT |
C |
2bp_deletion | frameshift_variant | 2 | A6,B61 |
Chr7:10776098 |
CTT |
C |
2bp_deletion | CDS_variant | 2 | A6,B61 |
Chr7:10776326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr7:10776450 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr7:10776458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B69,D11 |
Chr7:10776522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B121,B137,B77,B9,C63 |
Chr7:10776535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,B69 |
Chr7:10777004 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr7:10777143 |
G |
GTA |
2bp_insertion | frameshift_variant | 1 | B109 |
Chr7:10777143 |
G |
GTA |
2bp_insertion | CDS_variant | 1 | B109 |
Chr7:10777265 |
AGC |
A |
2bp_deletion | frameshift_variant | 1 | C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773247.1PF03107
C1_2 9-55 aa
PF03107
C1_2 65-110 aa
PF03107
C1_2 128-173 aa
PF03107
C1_2 182-233 aa
PF03107
C1_2 291-339 aa
PF03107
C1_2 363-405 aa
PF03107
C1_2 483-530 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773247.1 |
Pfam | PF03107 |
C1_2 | Domain | 9 | 55 | 1e-58 | 196.1 | C1 domain |
XP_057773247.1 |
Pfam | PF03107 |
C1_2 | Domain | 65 | 110 | 1e-58 | 196.1 | C1 domain |
XP_057773247.1 |
Pfam | PF03107 |
C1_2 | Domain | 128 | 173 | 1e-58 | 196.1 | C1 domain |
XP_057773247.1 |
Pfam | PF03107 |
C1_2 | Domain | 182 | 233 | 1e-58 | 196.1 | C1 domain |
XP_057773247.1 |
Pfam | PF03107 |
C1_2 | Domain | 291 | 339 | 1e-58 | 196.1 | C1 domain |
XP_057773247.1 |
Pfam | PF03107 |
C1_2 | Domain | 363 | 405 | 1e-58 | 196.1 | C1 domain |
XP_057773247.1 |
Pfam | PF03107 |
C1_2 | Domain | 483 | 530 | 1e-58 | 196.1 | C1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。