Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001390`

染色体: Chr07 坐标: 10781044-10781781 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001390`
名称	SmilChr07G001390
描述	probable calcium-binding protein CML44
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	10781044 - 10781781 / `+`

ID 对照

NCBI Gene ID	`LOC130992682`
GeneID	`130992682`
locus_tag	`-`
NCBI Name	`LOC130992682`
原始查询	`SmilChr07G001390`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable calcium-binding protein CML44
产物	probable calcium-binding protein CML44
Arabidopsis	`AT1G21550` (AT1G21550) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:838756] identity=45; qcov=0.961; evalue=3.92e-34; confidence=medium
Rice	`Os01g0949500` (OsCML10) - identity=40.7; qcov=0.903; evalue=5.86e-27; confidence=medium
GO	GO:0005509 (calcium ion binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:130992682

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057773416.1`
2	Endoplasmic reticulum	内质网	0.40000	`XP_057773416.1`
3	Cytosol	细胞质基质	0.20000	`XP_057773416.1`
4	Nucleus	细胞核	0.00000	`XP_057773416.1`
5	Chromosome	染色体	0.00000	`XP_057773416.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:10781080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B130,C12,C18,D1
`Chr7:10781152`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:10781160`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B65
`Chr7:10781160`	`GC`	`G`	1bp_deletion	CDS_variant	1	B65
`Chr7:10781163`	`GAA`	`G`	2bp_deletion	frameshift_variant	12	A5,A6,A8,B134,B16,B18,B23,B28,B79,C28,C50,C53
`Chr7:10781370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr7:10781391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr7:10781455`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B51,C52
`Chr7:10781472`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B42,B43,B51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773416.1

155 aa

155

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF13499 EF-hand_7 7-51 aa PF00036 EF-hand_1 8-34 aa PF13405 EF-hand_6 8-37 aa PF13202 EF-hand_5 11-33 aa PF00036 EF-hand_1 78-105 aa PF13405 EF-hand_6 78-106 aa PF13499 EF-hand_7 78-141 aa PF13202 EF-hand_5 81-101 aa PF13833 EF-hand_8 96-140 aa PF00036 EF-hand_1 116-141 aa PF13202 EF-hand_5 119-140 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773416.1`	Pfam	`PF13499`	EF-hand_7	Domain	7	51	5.2e-23	81.9	EF-hand domain pair
`XP_057773416.1`	Pfam	`PF00036`	EF-hand_1	Domain	8	34	1.7e-23	81.1	EF hand domain
`XP_057773416.1`	Pfam	`PF13405`	EF-hand_6	Domain	8	37	6.4e-23	79.0	EF-hand domain
`XP_057773416.1`	Pfam	`PF13202`	EF-hand_5	Domain	11	33	1.3e-16	60.0	EF hand
`XP_057773416.1`	Pfam	`PF00036`	EF-hand_1	Domain	78	105	1.7e-23	81.1	EF hand domain
`XP_057773416.1`	Pfam	`PF13405`	EF-hand_6	Domain	78	106	6.4e-23	79.0	EF-hand domain
`XP_057773416.1`	Pfam	`PF13499`	EF-hand_7	Domain	78	141	5.2e-23	81.9	EF-hand domain pair
`XP_057773416.1`	Pfam	`PF13202`	EF-hand_5	Domain	81	101	1.3e-16	60.0	EF hand
`XP_057773416.1`	Pfam	`PF13833`	EF-hand_8	Domain	96	140	1.6e-08	34.8	EF-hand domain pair
`XP_057773416.1`	Pfam	`PF00036`	EF-hand_1	Domain	116	141	1.7e-23	81.1	EF hand domain
`XP_057773416.1`	Pfam	`PF13202`	EF-hand_5	Domain	119	140	1.3e-16	60.0	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917433.1
AAACTCTTATTTTCTCCATCAATTAGAAGTATGTCAGTAATCAGCAGAGACGATCTCCACAAAATCTTCAAGAACTTGGACAAGAACAACAATGGCCGAATCTCCATCGCCGAGCTGCAGAATCTTCTTGAGGGAATCGGAATCCAAACGACGTCGGAAGAGCTGGAGAAGCTCGTGGGCCCGAACGATCTCGACTACGCCGAGTTCTTGCTCTTCTACGATGCCACGATCGAGCCTAAAATGAATGCAGACGACGGCGA...

CDS

1 records

下载 CDS FASTA

LOC130992682
ATGTCAGTAATCAGCAGAGACGATCTCCACAAAATCTTCAAGAACTTGGACAAGAACAACAATGGCCGAATCTCCATCGCCGAGCTGCAGAATCTTCTTGAGGGAATCGGAATCCAAACGACGTCGGAAGAGCTGGAGAAGCTCGTGGGCCCGAACGATCTCGACTACGCCGAGTTCTTGCTCTTCTACGATGCCACGATCGAGCCTAAAATGAATGCAGACGACGGCGACCTGTCGAAGGCCTTCGAGGTTTTCGACGT...

Protein

1 records

下载 Protein FASTA

XP_057773416.1
MSVISRDDLHKIFKNLDKNNNGRISIAELQNLLEGIGIQTTSEELEKLVGPNDLDYAEFLLFYDATIEPKMNADDGDLSKAFEVFDVDGDGFISCEELQMVLTKMGLWEKKSGQNCREMIDVYDKNLDGVLDFEEFKDMMSLPAAAAADDHERKS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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