Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001392

染色体: Chr07 坐标: 10787857-10791542 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001392
名称SmilChr07G001392
描述uncharacterized SmilChr07G001392
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向10787857 - 10791542 / +

ID 对照

NCBI Gene IDLOC130992618
GeneID130992618
locus_tag-
NCBI NameLOC130992618
原始查询SmilChr07G001392

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述hit=Os04g0221000; species=rice; confidence=weak
产物hit=Os04g0221000; species=rice; confidence=weak
ArabidopsisAT4G01170 (AT4G01170)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826561]
identity=32.1; qcov=0.309; evalue=3.01e-14; confidence=low
RiceOs04g0221000
-
identity=38.8; qcov=0.243; evalue=2.28e-14; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130992618

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.80000 XP_057773309.1
2 Cytoplasm 细胞质 0.60000 XP_057773309.1
3 Chromosome 染色体 0.40000 XP_057773309.1
4 Centromere 着丝粒 0.00000 XP_057773309.1
5 Chromatin 染色质 0.00000 XP_057773309.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:10789118 C T EMS_canonical_SNV CDS_variant 1 B51
Chr7:10789167 C T EMS_canonical_SNV CDS_variant 1 D11
Chr7:10789476 G A EMS_canonical_SNV CDS_variant 1 B73
Chr7:10789505 G A EMS_canonical_SNV CDS_variant 4 A19,B132,B85,C61
Chr7:10789518 C T EMS_canonical_SNV CDS_variant 4 B97,C5,C71,C76
Chr7:10789529 G A EMS_canonical_SNV CDS_variant 1 B51
Chr7:10789621 C T EMS_canonical_SNV CDS_variant 1 B51
Chr7:10789782 C T EMS_canonical_SNV CDS_variant 2 B104,C82
Chr7:10790235 C T EMS_canonical_SNV CDS_variant 1 C51
Chr7:10790983 G A EMS_canonical_SNV CDS_variant 1 B133
Chr7:10790995 C T EMS_canonical_SNV CDS_variant 2 C31,C61
Chr7:10791344 GC G 1bp_deletion frameshift_variant 1 B46

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057917331.1
ACCAAACATAAATAAATTATAACTGAATATGGTTTACGCAAATAAGGAAGAAGAGAAGATATCGTTGCTCTCCATAAATTGCATCTTTTCCTTAATCAGATAGAAAAGTGCAAGGAAAGTTATGAGGGTAAAGAGCTTTTCGGGCCAAGCCCAAAATTTTACGTTCCGAATTAAATGCACCCAAAAATATCTATTTTTTCGCCGTCAAACGATTCTTGCTCTACTTTTCTGACAAATTTATGACTCTTCGACTTTAAAGT...
XM_057917330.1
ATAAATTATAACTGAATATGGTTTACGCAAATAAGGAAGAAGAGAAGATATCGTTGCTCTCCATAAATTGCATCTTTTCCTTAATCAGATAGAAAAGTGCAAGGAAAGTTATGAGGGTAAAGAGCTTTTCGGGCCAAGCCCAAAATTTTACGTTCCGAATTAAATGCACCCAAAAATATCTATTTTTTCGCCGTCAAACGATTCTTGCTCTACTTTTCTGACAAATTTATGACTCTTCGACTTTAAAGTGCAGCTCTCTC...

CDS

6 records

下载 CDS FASTA
LOC130992618
ATGTCAAGCAACATACAAAAAACATATGATCGCAATGAATTACGTAGAATGCTGCTTGAAAACGGTGCGGACGTGGATTACATGCACCATTTGTTGAGCACATGTCCCGAGCAGCAGAAGAGCGCGGAGTCGAATCAAGAGCTGAGATTAACTGATGAAGAGCATAATTGCAGTTTCTCCGATGATGAGGAGGAGAAAAATGATCCTGATTATATGCGTTTCATAGCAAACTTGAAGGAGCACAACAAGGCGTACATGAT...
LOC130992618
ATGTCAAGCAACATACAAAAAACATATGATCGCAATGAATTACGTAGAATGCTGCTTGAAAACGGTGCGGACGTGGATTACATGCACCATTTGTTGAGCACATGTCCCGAGCAGCAGAAGAGCGCGGAGTCGAATCAAGAGCTGAGATTAACTGATGAAGAGCATAATTGCAGTTTCTCCGATGATGAGGAGGAGAAAAATGATCCTGATTATATGCGTTTCATAGCAAACTTGAAGGAGCACAACAAGGCGTACATGAT...

Protein

6 records

下载 Protein FASTA
XP_057773309.1
MSSNIQKTYDRNELRRMLLENGADVDYMHHLLSTCPEQQKSAESNQELRLTDEEHNCSFSDDEEEKNDPDYMRFIANLKEHNKAYMIEYEEDGSRAVIPYEGVLCSDIECDQEPRETLRKHEDGGPSDQMPRAETQGVLDSGSQREENPKSLALKGDSSLDRNRGQQFRKKLRSALKQNDEHFNQTEKLTRMNSRSKSTSEEEDVVVLDPVSHRVSSQNLKRLRAQWKSEYDEDMIQLDPEYDKFHQGLKLVNNHYVYKD...
XP_057773310.1
MSSNIQKTYDRNELRRMLLENGADVDYMHHLLSTCPEQQKSAESNQELRLTDEEHNCSFSDDEEEKNDPDYMRFIANLKEHNKAYMIEYEEDGSRAVIPYEGVLCSDIECDQEPRETLRKHEDGGPSDQMPRAETQGVLDSGSQREENPKSLALKGDSSLDRNRGQQFRKKLRSALKQNDEHFNQTEKLTRMNSRSKSTSEEEDVVVLDPVSHRVSSQNLKRLRAQWKSEYDEDMIQLDPEYDKFHQGLKLVNNHYVYKD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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