Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001402

染色体: Chr07 坐标: 10899419-10904866 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001402
名称SmilChr07G001402
描述uncharacterized SmilChr07G001402
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向10899419 - 10904866 / +

ID 对照

NCBI Gene IDLOC130992596
GeneID130992596
locus_tag-
NCBI NameLOC130992596
原始查询SmilChr07G001402

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838768]; symbol=AT1G21660; hit=AT1G21660; species=arabidopsis; confidence=medium
产物Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838768]; symbol=AT1G21660; hit=AT1G21660; species=arabidopsis; confidence=medium
ArabidopsisAT1G21660 (AT1G21660)
Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838768]
identity=35.9; qcov=1.12; evalue=3.31e-79; confidence=medium
RiceOs01g0355500 (OsDjC5)
-
identity=70.8; qcov=0.339; evalue=2.37e-76; confidence=low
GOGO:0005737 (cytoplasm); GO:0030276 (clathrin binding); GO:0031982 (vesicle); GO:0043231 (intracellular membrane-bounded organelle); GO:0072318 (clathrin coat disassembly); GO:0072583 (clathrin-dependent endocytosis)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130992596

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057773279.1
2 Trans-golgi network Trans-golgi network 1.00000 XP_057773279.1
3 Clathrin-coated vesicle Clathrin-coated vesicle 0.80000 XP_057773280.1
4 Cytoplasmic vesicle 细胞质囊泡 0.60000 XP_057773281.1
5 Vesicle 囊泡 0.60000 XP_057773280.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:10899933 C T EMS_canonical_SNV CDS_variant 1 B40
Chr7:10899960 C T EMS_canonical_SNV CDS_variant 1 B123
Chr7:10900040 C CTG 2bp_insertion frameshift_variant 3 C2,C31,C61
Chr7:10900040 C CTG 2bp_insertion CDS_variant 3 C2,C31,C61
Chr7:10900042 GAT G 2bp_deletion frameshift_variant 3 C2,C31,C61
Chr7:10900042 GAT G 2bp_deletion CDS_variant 3 C2,C31,C61
Chr7:10900053 G A EMS_canonical_SNV CDS_variant 5 B121,B137,B77,B9,C63
Chr7:10900321 C T EMS_canonical_SNV CDS_variant 1 C2
Chr7:10901022 C T EMS_canonical_SNV CDS_variant 1 C65
Chr7:10901029 G A EMS_canonical_SNV CDS_variant 1 B104
Chr7:10901158 G A EMS_canonical_SNV CDS_variant 1 D11
Chr7:10901161 G A EMS_canonical_SNV CDS_variant 1 B104

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057917297.1
TTTAAAATTATATATATCCTGAATAAGTAATATACCGCATAATTTTGAGTAGATACATTAAATCCACTGGTCCTTTAATTACAAATCCAATATCCCTTCCGTAGGAAAATGCAATGAATAAAAAATATTAGAGGTGAAGAAAAATACAAAAAATGGTACTCCATAACCGTGTCAAAAATACGAAGTCCGGACCGCCCCCTCTGGCCGCTGGCCCACCGCCACCTCGACGTTCCACCTACTCTCTCTGAATCTTCCTGGCT...
XM_057917296.1
TTTAAAATTATATATATCCTGAATAAGTAATATACCGCATAATTTTGAGTAGATACATTAAATCCACTGGTCCTTTAATTACAAATCCAATATCCCTTCCGTAGGAAAATGCAATGAATAAAAAATATTAGAGGTGAAGAAAAATACAAAAAATGGTACTCCATAACCGTGTCAAAAATACGAAGTCCGGACCGCCCCCTCTGGCCGCTGGCCCACCGCCACCTCGACGTTCCACCTACTCTCTCTGAATCTTCCTGGCT...

CDS

3 records

下载 CDS FASTA
LOC130992596
ATGGACGAATTCGGGGTTTTGGTTGAGAGCATCGGCTTCAGAGCGCAGGGCAAATCAGCGCCCATGGCTAAATTGAAGCCAAAACCTAAATCACAATTCACAGCTAATAGCCATACCCCCGATGCAACGTCGTCGGTTGGCGATCCTTATTCGCTACCTGTTGATCAGCTCGACGGGATATTCAGGTCCAATGTTAGCACCGGGAGAACTCCGCAATCCCAAAATCTACTTGTTGATGACGATATTTTCGGTGGTAGTGT...
LOC130992596
ATGGACGAATTCGGGGTTTTGGTTGAGAGCATCGGCTTCAGAGCGCAGGGCAAATCAGCGCCCATGGCTAAATTGAAGCCAAAACCTAAATCACAATTCACAGCTAATAGCCATACCCCCGATGCAACGTCGTCGGTTGGCGATCCTTATTCGCTACCTGTTGATCAGCTCGACGGGATATTCAGGTCCAATGTTAGCACCGGGAGAACTCCGCAATCCCAAAATCTACTTGTTGATGACGATATTTTCGGTGGTAGTGT...

Protein

3 records

下载 Protein FASTA
XP_057773279.1
MDEFGVLVESIGFRAQGKSAPMAKLKPKPKSQFTANSHTPDATSSVGDPYSLPVDQLDGIFRSNVSTGRTPQSQNLLVDDDIFGGSVSSSQQFGGVDLETVLSGSKARNNYSSSSKSPIGLSAYDDFSGYKPKPVGNVDDLLGNLGLNSNVKLEKKGSGLDDLMSTFGGESATNTRVFSETKSFPASNVRPSNSSSTLIDDPFLVFESSASWPFDGPSNQDRGKGSVQSPIDDDFDDFISGGTKSKVDAISTTASYKPMS...
XP_057773280.1
MDEFGVLVESIGFRAQGKSAPMAKLKPKPKSQFTANSHTPDATSSVGDPYSLPVDQLDGIFRSNVSTGRTPQSQNLLVDDDIFGGSVSSSQQFGGVDLETVLSGSKARNNYSSSSKSPIGLSAYDDFSGYKPKPVGNVDDLLGNLGLNSNVKLEKKGSGLDDLMSTFGGESATNTSIIFNRVFSETKSFPASNVRPSNSSSTLIDDPFLVFESSASWPFDGPSNQDRGKGSVQSPIDDDFDDFISGGTKSKVDAISTTAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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