当前解析结果
SmilChr07G001402| 统一新 Gene ID | SmilChr07G001402 |
|---|---|
| 名称 | SmilChr07G001402 |
| 描述 | uncharacterized SmilChr07G001402 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 10899419 - 10904866 / + |
| NCBI Gene ID | LOC130992596 |
|---|---|
| GeneID | 130992596 |
| locus_tag | - |
| NCBI Name | LOC130992596 |
| 原始查询 | SmilChr07G001402 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838768]; symbol=AT1G21660; hit=AT1G21660; species=arabidopsis; confidence=medium |
| 产物 | Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838768]; symbol=AT1G21660; hit=AT1G21660; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G21660 (AT1G21660)Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838768] identity=35.9; qcov=1.12; evalue=3.31e-79; confidence=medium |
| Rice | Os01g0355500 (OsDjC5)- identity=70.8; qcov=0.339; evalue=2.37e-76; confidence=low |
| GO | GO:0005737 (cytoplasm); GO:0030276 (clathrin binding); GO:0031982 (vesicle); GO:0043231 (intracellular membrane-bounded organelle); GO:0072318 (clathrin coat disassembly); GO:0072583 (clathrin-dependent endocytosis) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992596 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057773279.1 |
| 2 | Trans-golgi network | Trans-golgi network | 1.00000 | XP_057773279.1 |
| 3 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.80000 | XP_057773280.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.60000 | XP_057773281.1 |
| 5 | Vesicle | 囊泡 | 0.60000 | XP_057773280.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:10899933 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr7:10899960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr7:10900040 |
C |
CTG |
2bp_insertion | frameshift_variant | 3 | C2,C31,C61 |
Chr7:10900040 |
C |
CTG |
2bp_insertion | CDS_variant | 3 | C2,C31,C61 |
Chr7:10900042 |
GAT |
G |
2bp_deletion | frameshift_variant | 3 | C2,C31,C61 |
Chr7:10900042 |
GAT |
G |
2bp_deletion | CDS_variant | 3 | C2,C31,C61 |
Chr7:10900053 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B121,B137,B77,B9,C63 |
Chr7:10900321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr7:10901022 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr7:10901029 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:10901158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:10901161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。