当前解析结果
SmilChr07G001410| 统一新 Gene ID | SmilChr07G001410 |
|---|---|
| 名称 | SmilChr07G001410 |
| 描述 | kinesin-like protein KIN-7C, mitochondrial |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 10964862 - 10974237 / + |
| NCBI Gene ID | LOC130992546 |
|---|---|
| GeneID | 130992546 |
| locus_tag | - |
| NCBI Name | LOC130992546 |
| 原始查询 | SmilChr07G001410 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-7C, mitochondrial |
| 产物 | kinesin-like protein KIN-7C%2C mitochondrial |
| Arabidopsis | AT1G21730 (AT1G21730)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838777] identity=61.5; qcov=0.865; evalue=0; confidence=high |
| Rice | Os04g0434600- identity=58.4; qcov=0.95; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992546 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057773203.1 |
| 2 | Phragmoplast | Phragmoplast | 1.00000 | XP_057773203.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057773203.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057773203.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057773203.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:10965005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B3,B36,C15,C45,C7 |
Chr7:10965019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr7:10965049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B6,C67 |
Chr7:10965056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,C46 |
Chr7:10967263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,C32,C58,C68,C8 |
Chr7:10968164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr7:10969300 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,C25 |
Chr7:10970300 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:10970597 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B51 |
Chr7:10970685 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B77,C75 |
Chr7:10970685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B77,C75 |
Chr7:10970701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773203.1PF00225
Kinesin 59-371 aa
PF16796
Microtub_bd 82-190 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773203.1 |
Pfam | PF00225 |
Kinesin | Domain | 59 | 371 | 5.9e-105 | 351.6 | Kinesin motor domain |
XP_057773203.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 82 | 190 | 1.9e-20 | 74.0 | Microtubule binding |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。