Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001411`

染色体: Chr07 坐标: 10974393-10984570 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001411`
名称	SmilChr07G001411
描述	aldehyde dehydrogenase-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	10974393 - 10984570 / `-`

ID 对照

NCBI Gene ID	`LOC130992606`
GeneID	`130992606`
locus_tag	`-`
NCBI Name	`LOC130992606`
原始查询	`SmilChr07G001411`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	aldehyde dehydrogenase-like
产物	aldehyde dehydrogenase-like
Arabidopsis	`AT1G44170` (ALDH3H1) aldehyde dehydrogenase 3H1 [Source:NCBI gene (formerly Entrezgene);Acc:841020] identity=61.2; qcov=0.992; evalue=0; confidence=high
Rice	`Os11g0186200` (OsALDH3H2) - identity=59.9; qcov=0.992; evalue=0; confidence=high
GO	GO:0004029 (aldehyde dehydrogenase (NAD+) activity); GO:0005737 (cytoplasm); GO:0006081 (aldehyde metabolic process)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00310 (Lysine degradation - Salvia miltiorrhiza (redroot sage)); smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil00340 (Histidine metabolism - Salvia miltiorrhiza (redroot sage)); smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00770 (Pantothenate and CoA biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00171 (Aldedh); PF05893 (LuxC)
InterPro	-
eggNOG	-
NR	GeneID:130992606

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	0.60000	`XP_057773293.1`
2	Endoplasmic reticulum	内质网	0.40000	`XP_057773293.1`
3	Cytosol	细胞质基质	0.20000	`XP_057773293.1`
4	Nucleus	细胞核	0.00000	`XP_057773293.1`
5	Chromosome	染色体	0.00000	`XP_057773293.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:10975384`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C31,C61
`Chr7:10975734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr7:10976020`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr7:10976042`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr7:10976372`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	D2
`Chr7:10976372`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr7:10976401`	`G`	`GC`	1bp_insertion	frameshift_variant	8	B109,B44,B59,B80,B85,B91,C13,C37
`Chr7:10976474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr7:10976549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr7:10977019`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,B60,C39,D10
`Chr7:10977027`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr7:10977187`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B109

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773293.1

478 aa

239

478

Aldedh

LuxC

PF00171 Aldedh 3-433 aa PF05893 LuxC 106-286 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773293.1`	Pfam	`PF00171`	Aldedh	Family	3	433	6.8e-85	286.1	Aldehyde dehydrogenase family
`XP_057773293.1`	Pfam	`PF05893`	LuxC	Family	106	286	1.5e-05	24.8	Acyl-CoA reductase (LuxC)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917310.1
ACAAATAAAAGTAGGAAGATAAATTACAAGACGACATGAAATACTATAAAGAGAAGATGGGGAAATAATGTACAAACCCTTGTGCTCTTCTGCTTCCCCATTGAGGGAAAATCGCATTAACCTTTCACTAACCACCCCTCGCTTCAAACGTGTCCTCTACTTTTGGAAAGAAAGCATACAACTCATATACATCTCTCTGTCTCTATATATACATATACATATATGATAGTATATCACCGAGAGAGAAAGAGAGAGAATGG...

CDS

1 records

下载 CDS FASTA

LOC130992606
ATGGCTGCAGTAGAAGCGGAAGCGGCGGTGCGGGAGCTGAGAGACACCTACGCCGCCGGAAAGACTAAGAGTTTCGAGTGGCGGATTTCGCAGTTGAAAGCAATACAGCAGATTCTCACTCTTCACAGCGAGGAAATAATCGGAGCTTTACGCTCCGATCTCAAAAAACCAGAATTTGAAGCAGTTATTCATGAGATTTCTGTAGTATCAGCATCGTGCAAATTAGCGTTGAAGGAACTGCATCGATGGATGAAACCGCA...

Protein

1 records

下载 Protein FASTA

XP_057773293.1
MAAVEAEAAVRELRDTYAAGKTKSFEWRISQLKAIQQILTLHSEEIIGALRSDLKKPEFEAVIHEISVVSASCKLALKELHRWMKPQKVKTTLITFPSSAKIVSEPFGVVLVISAWNFPFALSVDPVIGAIAAGNAVVLKPSENAPATSSLLAKLVGKYMDASAVKVVEGAVPQTTALLDQKWDKILYTGGSAVGRIVLTAAAKHLTPVILELGGKCPAVVDSKINLKVAARRIIAGKWGCNNGQACISPDYLITTKDFV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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