Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001425`

染色体: Chr07 坐标: 11080367-11083773 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001425`
名称	SmilChr07G001425
描述	flavonoid 8-hydroxylase 2, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	11080367 - 11083773 / `+`

ID 对照

NCBI Gene ID	`LOC130992587`
GeneID	`130992587`
locus_tag	`-`
NCBI Name	`LOC130992587`
原始查询	`SmilChr07G001425`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	flavonoid 8-hydroxylase 2, chloroplastic-like
产物	flavonoid 8-hydroxylase 2%2C chloroplastic-like
Arabidopsis	`AT4G25650` (ACD1-LIKE) ACD1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:828670] identity=58.7; qcov=0.878; evalue=2.01e-178; confidence=high
Rice	`Os03g0805700` - identity=46.6; qcov=0.893; evalue=3.41e-133; confidence=high
GO	GO:0010277 (chlorophyllide a oxygenase activity); GO:0051537 (2 iron, 2 sulfur cluster binding)
KEGG	-
Pfam	PF00355 (Rieske); PF08417 (PaO)
InterPro	-
eggNOG	-
NR	GeneID:130992587

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057773259.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057773259.1`
3	Chloroplast thylakoid	类囊体	0.80000	`XP_057773260.1`
4	Chloroplast stroma	叶绿体基质	0.40000	`XP_057773260.1`
5	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057773260.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:11080489`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C17,D5
`Chr7:11080663`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr7:11080748`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:11080790`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B115
`Chr7:11080790`	`TG`	`T`	1bp_deletion	CDS_variant	1	B115
`Chr7:11080865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,C25,C3,D1
`Chr7:11080869`	`AGT`	`A`	2bp_deletion	frameshift_variant	8	B11,B17,B47,B6,B77,C22,C3,C67
`Chr7:11080895`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B113,B88,C30,C57,C60
`Chr7:11080942`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B119,B18,B75,D11
`Chr7:11082379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B78,B82
`Chr7:11082761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B28,D2,D7
`Chr7:11082766`	`TC`	`T`	1bp_deletion	frameshift_variant	57	A10,A15,A21,A24,B1,B107,B115,B121,B122,B123,B124,B128,B133,B136,B16,B20,B33,B34,B35,B38,B39,B44,B5,B51,B52,B53,B54,B6,B62,B76,B77,B8,B86,B93,B95,C13,C15,C17,C21,C22,C23,C29,C30,C35,C40,C41,C47,C58,C61,C63,C67,C70,C81,C83,D3,D4,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773259.1

539 aa

270

539

Rieske

PaO

PF00355 Rieske 84-168 aa PF08417 PaO 300-398 aa

XP_057773260.1

485 aa

242

485

Rieske

PaO

PF00355 Rieske 84-168 aa PF08417 PaO 300-398 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773259.1`	Pfam	`PF00355`	Rieske	Domain	84	168	2.9e-23	82.3	Rieske [2Fe-2S] domain
`XP_057773259.1`	Pfam	`PF08417`	PaO	Family	300	398	1.7e-27	96.1	Pheophorbide a oxygenase
`XP_057773260.1`	Pfam	`PF00355`	Rieske	Domain	84	168	2.4e-23	82.5	Rieske [2Fe-2S] domain
`XP_057773260.1`	Pfam	`PF08417`	PaO	Family	300	398	1.6e-27	96.2	Pheophorbide a oxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917277.1
ACGAGTGTATTTAATAGTAGTTGATACGGAACTGAATCAACACTGAAACAAATTGAGTTGCCTGCCATGGAAATTCTAAGCACTTCATCCCTCCTATCACCACCCATCTCAGCGCCAAACCCCAGAAACGCATACGCCAAAAAACCCATTCTACACATTCCATCGTCTCCACGAATAGCGCCACTTCTTTCCACCCAGAGATCATCGAATTCCCAGATTGTCACCGCGGTTTCTCCTACGACGGTGGAATCTTCGGCGCC...

XM_057917276.1
GTGTATTTAATAGTAGTTGATACGGAACTGAATCAACACTGAAACAAATTGAGTTGCCTGCCATGGAAATTCTAAGCACTTCATCCCTCCTATCACCACCCATCTCAGCGCCAAACCCCAGAAACGCATACGCCAAAAAACCCATTCTACACATTCCATCGTCTCCACGAATAGCGCCACTTCTTTCCACCCAGAGATCATCGAATTCCCAGATTGTCACCGCGGTTTCTCCTACGACGGTGGAATCTTCGGCGCCGCCC...

CDS

2 records

下载 CDS FASTA

LOC130992587
ATGGAAATTCTAAGCACTTCATCCCTCCTATCACCACCCATCTCAGCGCCAAACCCCAGAAACGCATACGCCAAAAAACCCATTCTACACATTCCATCGTCTCCACGAATAGCGCCACTTCTTTCCACCCAGAGATCATCGAATTCCCAGATTGTCACCGCGGTTTCTCCTACGACGGTGGAATCTTCGGCGCCGCCCTATCAAGAAGTTGGAGCCGAGAAGAGAGAGGAGAAGTTCGAGTGGTACGAGCAGTGGTATCC...

Protein

2 records

下载 Protein FASTA

XP_057773259.1
MEILSTSSLLSPPISAPNPRNAYAKKPILHIPSSPRIAPLLSTQRSSNSQIVTAVSPTTVESSAPPYQEVGAEKREEKFEWYEQWYPVWAVCDLDKTRPHARKVIGIDVVVWWDRNENAWKVFEDSCPHRLAPLSEGRIDRWGRLQCVYHGWCFGADGDCKFIPQATRDGPPIHNAKKACVAVYPSCVQNGILWFWPNSDPHYKDIHSKIKPHYIPELDDPSFANTTLMSRELGYGYEVLIENLMDPAHVPYAHHGIMRT...

XP_057773260.1
MEILSTSSLLSPPISAPNPRNAYAKKPILHIPSSPRIAPLLSTQRSSNSQIVTAVSPTTVESSAPPYQEVGAEKREEKFEWYEQWYPVWAVCDLDKTRPHARKVIGIDVVVWWDRNENAWKVFEDSCPHRLAPLSEGRIDRWGRLQCVYHGWCFGADGDCKFIPQATRDGPPIHNAKKACVAVYPSCVQNGILWFWPNSDPHYKDIHSKIKPHYIPELDDPSFANTTLMSRELGYGYEVLIENLMDPAHVPYAHHGIMRT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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