当前解析结果
SmilChr07G001426| 统一新 Gene ID | SmilChr07G001426 |
|---|---|
| 名称 | SmilChr07G001426 |
| 描述 | uncharacterized SmilChr07G001426 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 11093015 - 11095356 / + |
| NCBI Gene ID | LOC130992585 |
|---|---|
| GeneID | 130992585 |
| locus_tag | - |
| NCBI Name | LOC130992585 |
| 原始查询 | SmilChr07G001426 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calcium ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:826452]; symbol=SUB1; hit=AT4G08810; species=arabidopsis; confidence=high |
| 产物 | calcium ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:826452]; symbol=SUB1; hit=AT4G08810; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G08810 (SUB1)calcium ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:826452] identity=71.98; qcov=0.989; evalue=0.0; confidence=high |
| Rice | Os07g0633600 (P0519E12.134)- identity=62.0; qcov=0.985; evalue=0.0; confidence=high |
| GO | GO:0005794 (Golgi apparatus) |
| KEGG | - |
| Pfam | PF23269 (DUF7074); PF23272 (DUF7075) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992585 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:11093591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr7:11094006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B41,C35,C42 |
Chr7:11094069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr7:11094243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr7:11094540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr7:11094557 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C13,C38 |
Chr7:11094690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,C25,C3,D1 |
Chr7:11094879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,C25,C3,D1 |
Chr7:11094909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773256.1PF23269
DUF7074 119-202 aa
PF23272
DUF7075 238-532 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773256.1 |
Pfam | PF23269 |
DUF7074 | Domain | 119 | 202 | 3.1e-36 | 124.2 | Domain of unknown function (DUF7074) |
XP_057773256.1 |
Pfam | PF23272 |
DUF7075 | Domain | 238 | 532 | 3.1e-64 | 217.6 | Domain of unknown function (DUF7075) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。