Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001456`

染色体: Chr07 坐标: 11409915-11416249 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001456`
名称	SmilChr07G001456
描述	apyrase 2-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	11409915 - 11416249 / `+`

ID 对照

NCBI Gene ID	`LOC130992591`
GeneID	`130992591`
locus_tag	`-`
NCBI Name	`LOC130992591`
原始查询	`SmilChr07G001456`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	apyrase 2-like
产物	apyrase 2-like
Arabidopsis	`AT5G18280` (APY2) apyrase 2 [Source:NCBI gene (formerly Entrezgene);Acc:831946] identity=68.8; qcov=0.998; evalue=0; confidence=high
Rice	`Os07g0682800` (OsAPY) - identity=64.5; qcov=0.976; evalue=0; confidence=high
GO	GO:0009134 (nucleoside diphosphate catabolic process); GO:0016020 (membrane); GO:0017110 (nucleoside diphosphate phosphatase activity)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF01150 (GDA1_CD39)
InterPro	-
eggNOG	-
NR	GeneID:130992591

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057773267.1`
2	Trans-golgi network	Trans-golgi network	0.60000	`XP_057773267.1`
3	Golgi stack	高尔基堆	0.20000	`XP_057773267.1`
4	Lysosome	溶酶体	0.20000	`XP_057773268.1`
5	Nucleus	细胞核	0.00000	`XP_057773267.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:11410568`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B11,B48,B73,B74
`Chr7:11410574`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:11410606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,D6
`Chr7:11410623`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,D11,D6
`Chr7:11410625`	`C`	`T`	EMS_canonical_SNV	stop_gained	10	B112,B114,B120,B26,B30,B63,B95,C40,C47,C57
`Chr7:11410637`	`C`	`T`	EMS_canonical_SNV	stop_gained	66	A1,A13,A22,A23,A3,A4,A7,A8,B102,B105,B109,B112,B118,B12,B123,B13,B131,B136,B137,B139,B15,B17,B21,B23,B28,B3,B31,B33,B34,B35,B4,B47,B48,B52,B54,B58,B59,B64,B68,B69,B80,B83,B84,B85,B93,C15,C17,C19,C20,C24,C25,C29,C48,C55,C58,C59,C63,C67,C68,C73,C74,C78,C8,C87,D5,D9
`Chr7:11410688`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B45,B50,B67,C57
`Chr7:11410704`	`GAA`	`G`	2bp_deletion	frameshift_variant	5	B13,B95,C24,C26,C83
`Chr7:11410704`	`GAA`	`G`	2bp_deletion	CDS_variant	5	B13,B95,C24,C26,C83
`Chr7:11410756`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:11410765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:11410766`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773267.1

517 aa

258

517

GDA1_CD39

PF01150 GDA1_CD39 113-514 aa

XP_057773268.1

465 aa

232

465

GDA1_CD39

PF01150 GDA1_CD39 61-462 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773267.1`	Pfam	`PF01150`	GDA1_CD39	Family	113	514	9.1e-108	361.4	GDA1/CD39 (nucleoside phosphatase) family
`XP_057773268.1`	Pfam	`PF01150`	GDA1_CD39	Family	61	462	8.9e-108	361.4	GDA1/CD39 (nucleoside phosphatase) family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917284.1
GCCGTTAATTAATTAATTTGGGTACAAATCAAAGTTTCCATCTCTCACTTTGCGTCTTCCTCAACTCATTTGTTCATGCACGCCCTCCAAAACTAACACTTCACAGAGGAGCATCTCCCACTCTTCTTCTGTGTTGTTGTTCAAGATAGAGATCCCCTCTCTACTGATTCCGTCGAATTATTTATAGACGGATCCGCGTGGATTGGGTAGAGTTGTGGATGGAAGGAGCTAAATCATTTTGGAAAGGCGACGAGCAGGAA...

XM_057917285.1
ATCCAGACGGATCCGCGTGGATTGGGTAGAGTTGTGGATGGAAGGAGCTAAATCATTTTCTCTACCAATTGAGTATCTGATTTGAAGGGAAAGGCGACGAGCAGGAAGAGCTGGAGTCGGTGCAGGATACCCAGCCATTGAAGTCTGGTGGGGGAAACGGCCAGATTCGATTTCGATCACCGTCGGCTGCTGAGCTTTTGGATGCGCAGCAGCAAGTTCAGATGGAGAAGGTTTTGAAAAGAAACAGGCAGCACGAGACC...

CDS

2 records

下载 CDS FASTA

LOC130992591
ATGGAAGGAGCTAAATCATTTTGGAAAGGCGACGAGCAGGAAGAGCTGGAGTCGGTGCAGGATACCCAGCCATTGAAGTCTGGTGGGGGAAACGGCCAGATTCGATTTCGATCACCGTCGGCTGCTGAGCTTTTGGATGCGCAGCAGCAAGTTCAGATGGAGAAGGTTTTGAAAAGAAACAGGCAGCACGAGACCTTCTCTGACAAGTTCCAGAGATGGCGTGGTGCGATGCTATTGGTTTTTGTCCCTCTCCTGCTGAT...

LOC130992591
ATGGAGAAGGTTTTGAAAAGAAACAGGCAGCACGAGACCTTCTCTGACAAGTTCCAGAGATGGCGTGGTGCGATGCTATTGGTTTTTGTCCCTCTCCTGCTGATCTCCTTTGTGCTATTTCTCATGCCCTCGAGGTCGTCTCCCGATTCTATCTCTCGTAAGTTCGCACCAAACTTCATGTCTAAGAAATATGCGGTCATCTTTGATGCCGGAAGCTCTGGCAGTCGGGTGCACGTCTTCTGCTTCAACAAGCAGCTAGA...

Protein

2 records

下载 Protein FASTA

XP_057773267.1
MEGAKSFWKGDEQEELESVQDTQPLKSGGGNGQIRFRSPSAAELLDAQQQVQMEKVLKRNRQHETFSDKFQRWRGAMLLVFVPLLLISFVLFLMPSRSSPDSISRKFAPNFMSKKYAVIFDAGSSGSRVHVFCFNKQLDLVPMGEELELFEQLKPGLSAYAKDSEAAAKSLSKLLEKAEAAVPGELRSITPVKVGATAGLRQLEGDASDRILQAVRDYLKNKSSLKSKADWVTVLDGNQEGAYQWVTINYLLGNLGNEYS...

XP_057773268.1
MEKVLKRNRQHETFSDKFQRWRGAMLLVFVPLLLISFVLFLMPSRSSPDSISRKFAPNFMSKKYAVIFDAGSSGSRVHVFCFNKQLDLVPMGEELELFEQLKPGLSAYAKDSEAAAKSLSKLLEKAEAAVPGELRSITPVKVGATAGLRQLEGDASDRILQAVRDYLKNKSSLKSKADWVTVLDGNQEGAYQWVTINYLLGNLGNEYSGTVGVVDLGGGSVQMAYAISESDAAKAPKVSGGEESYVQQMYLKGRKYYLYI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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