当前解析结果
SmilChr07G001479| 统一新 Gene ID | SmilChr07G001479 |
|---|---|
| 名称 | SmilChr07G001479 |
| 描述 | uncharacterized SmilChr07G001479 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 11643174 - 11647294 / + |
| NCBI Gene ID | LOC130993815 |
|---|---|
| GeneID | 130993815 |
| locus_tag | - |
| NCBI Name | LOC130993815 |
| 原始查询 | SmilChr07G001479 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826484]; symbol=AT4G09060; hit=AT4G09060; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826484]; symbol=AT4G09060; hit=AT4G09060; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G09060 (AT4G09060)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826484] identity=38.9; qcov=0.99; evalue=9.97e-76; confidence=medium |
| Rice | Os02g0831400 (SIP16)- identity=40.2; qcov=0.289; evalue=3.5e-12; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993815 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057774835.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057774835.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774835.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774835.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774835.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:11643407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,B81 |
Chr7:11643635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr7:11643669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr7:11643787 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B135,B8 |
Chr7:11643833 |
C |
CA |
1bp_insertion | frameshift_variant | 82 | A10,A15,A25,B100,B102,B105,B106,B107,B111,B112,B113,B115,B119,B121,B123,B128,B129,B13,B131,B137,B14,B15,B20,B24,B3,B33,B35,B36,B37,B4,B41,B42,B43,B44,B45,B48,B49,B51,B54,B62,B66,B67,B68,B75,B79,B8,B80,B86,B91,B93,B94,C10,C15,C18,C19,C20,C23,C27,C30,C31,C33,C34,C35,C36,C38,C39,C40,C42,C44,C45,C46,C49,C51,C53,C61,C7,C81,C82,C85,D3,D7,D9 |
Chr7:11645462 |
C |
CA |
1bp_insertion | frameshift_variant | 60 | A10,B100,B102,B105,B107,B111,B112,B113,B115,B123,B128,B13,B131,B14,B15,B20,B3,B33,B35,B36,B37,B4,B41,B42,B43,B44,B45,B48,B49,B66,B67,B68,B79,B8,B86,B91,B93,C10,C15,C2,C20,C23,C27,C31,C33,C34,C35,C36,C38,C39,C42,C49,C51,C53,C61,C7,C82,D11,D3,D7 |
Chr7:11645483 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr7:11645510 |
A |
AC |
1bp_insertion | frameshift_variant | 9 | A4,B12,B21,B27,B36,B55,B88,C2,C26 |
Chr7:11645545 |
T |
TG |
1bp_insertion | frameshift_variant | 35 | A18,A5,A8,B103,B11,B122,B127,B13,B136,B17,B2,B35,B47,B56,B6,B63,B70,B78,B81,B83,B96,B99,C21,C22,C25,C3,C39,C40,C48,C55,C56,C58,C62,C67,C70 |
Chr7:11645555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr7:11645633 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:11646346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。