当前解析结果
SmilChr07G001487| 统一新 Gene ID | SmilChr07G001487 |
|---|---|
| 名称 | SmilChr07G001487 |
| 描述 | O-fucosyltransferase 7 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 11701879 - 11708413 / + |
| NCBI Gene ID | LOC130992588 |
|---|---|
| GeneID | 130992588 |
| locus_tag | - |
| NCBI Name | LOC130992588 |
| 原始查询 | SmilChr07G001487 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | O-fucosyltransferase 7 |
| 产物 | O-fucosyltransferase 7 |
| Arabidopsis | AT1G22460 (AT1G22460)O-fucosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838852] identity=71.4; qcov=0.964; evalue=0; confidence=high |
| Rice | Os12g0190100- identity=59.6; qcov=0.922; evalue=0; confidence=high |
| GO | GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF10250 (O-FucT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992588 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057773261.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057773261.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057773262.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773262.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773262.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:11702128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:11702255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr7:11702640 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr7:11703059 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr7:11704781 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B72 |
Chr7:11704781 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B72 |
Chr7:11704969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C38,C86 |
Chr7:11705042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr7:11705211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr7:11705233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:11705259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C75,D6 |
Chr7:11705486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773261.1PF10250
O-FucT 127-442 aa
XP_057773262.1PF10250
O-FucT 36-351 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773261.1 |
Pfam | PF10250 |
O-FucT | Family | 127 | 442 | 7.5e-107 | 358.7 | GDP-fucose protein O-fucosyltransferase |
XP_057773262.1 |
Pfam | PF10250 |
O-FucT | Family | 36 | 351 | 4.4e-107 | 359.4 | GDP-fucose protein O-fucosyltransferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。