Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001497`

染色体: Chr07 坐标: 11856036-11887003 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001497`
名称	SmilChr07G001497
描述	BEACH domain-containing protein B
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	11856036 - 11887003 / `-`

ID 对照

NCBI Gene ID	`LOC130992533`
GeneID	`130992533`
locus_tag	`-`
NCBI Name	`LOC130992533`
原始查询	`SmilChr07G001497`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BEACH domain-containing protein B
产物	BEACH domain-containing protein B
Arabidopsis	`AT1G58230` (AT1G58230) binding protein [Source:NCBI gene (formerly Entrezgene);Acc:842191] identity=61.3; qcov=0.802; evalue=0; confidence=high
Rice	`Os02g0162766` - identity=41.2; qcov=0.196; evalue=1.3e-146; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00400 (WD40); PF02138 (Beach); PF14844 (PH_BEACH); PF15787 (DUF4704); PF16057 (DUF4800); PF20425 (Neurobeachin); PF20426 (NBCH_WD40); PF28615 (DDB_G0281251)
InterPro	-
eggNOG	-
NR	GeneID:130992533

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057773179.1`
2	Cytosol	细胞质基质	0.20000	`XP_057773179.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057773179.1`
4	Trans-golgi network	Trans-golgi network	0.20000	`XP_057773179.1`
5	Nucleus	细胞核	0.00000	`XP_057773179.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:11857720`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A6,C50
`Chr7:11857808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr7:11857896`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C14
`Chr7:11857896`	`TG`	`T`	1bp_deletion	CDS_variant	1	C14
`Chr7:11861662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:11861689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr7:11861756`	`TTC`	`T`	2bp_deletion	frameshift_variant	1	A15
`Chr7:11861756`	`TTC`	`T`	2bp_deletion	CDS_variant	1	A15
`Chr7:11861857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr7:11862074`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr7:11862165`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr7:11863119`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773179.1

3239 aa

1620

3239

DDB_G0281251

Neurobeachin

DUF4704

DUF4800

PH_BEACH

Beach

NBCH_WD40

WD40

PF28615 DDB_G0281251 547-647 aa PF20425 Neurobeachin 650-1072 aa PF15787 DUF4704 1323-1841 aa PF16057 DUF4800 2203-2296 aa PF14844 PH_BEACH 2405-2544 aa PF02138 Beach 2580-2857 aa PF20426 NBCH_WD40 2878-3226 aa PF00400 WD40 2992-3028 aa PF00400 WD40 3058-3091 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773179.1`	Pfam	`PF28615`	DDB_G0281251	Domain	547	647	7.3e-37	126.5	DDB_G0281251 small helical domain
`XP_057773179.1`	Pfam	`PF20425`	Neurobeachin	Repeat	650	1072	1e-202	674.5	Neurobeachin alpha solenoid region
`XP_057773179.1`	Pfam	`PF15787`	DUF4704	Repeat	1323	1841	6.6e-151	504.1	Neurobeachin/BDCP, DUF4704 alpha solenoid region
`XP_057773179.1`	Pfam	`PF16057`	DUF4800	Family	2203	2296	3.5e-07	30.4	Domain of unknown function (DUF4800)
`XP_057773179.1`	Pfam	`PF14844`	PH_BEACH	Domain	2405	2544	1.8e-13	51.2	PH domain associated with Beige/BEACH
`XP_057773179.1`	Pfam	`PF02138`	Beach	Family	2580	2857	6.4e-125	416.8	Beige/BEACH domain
`XP_057773179.1`	Pfam	`PF20426`	NBCH_WD40	Repeat	2878	3226	8.7e-193	640.6	Neurobeachin beta propeller domain
`XP_057773179.1`	Pfam	`PF00400`	WD40	Repeat	2992	3028	1.2e-14	54.8	WD domain, G-beta repeat
`XP_057773179.1`	Pfam	`PF00400`	WD40	Repeat	3058	3091	1.2e-14	54.8	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917196.1
AACGTATGCATTTGGACTGGACGGTTGATATGAATGATATAAATGAATCAATTAGCACTCCAATTTCGCAACTTATTAGTTGAGCTTCAAGAAGAATCTTCTTCTCAGATCTTAATTCTCCAAACCCTGATTAATCAAATTATGAATTAAGGTTCAACAAACATATACTCCTTTTTGATCCGATCAGTTGTGGAGCGGAGCTTGGGTTTCGAGGAAGAGATGGTTGATTGGAGCTATTCTTTGCCTATTTGTGGATGGTT...

CDS

1 records

下载 CDS FASTA

LOC130992533
ATGAACATTGTCAAAGGTGTAGCAGACCTCTTCTGGAGGACTTCGAGTCCCCAAAGTGGAGAACATGGTTCATCCTCGCAATCTGGGAGGTTTTCACCCCCAACTCCTAAGATCGTCTTCAGTGAGGTAGGCGATGAGGCAATTTTGAAGGAACTGCTGGAAAGATATACAAGTGCTGTTAATGAGGTGGAAAAGAGAAAATTGTTCCATATTTTTCTGAAGCAGTTCTTGACAGTATTCCGGGATTGGAAACCATTTAA...

Protein

1 records

下载 Protein FASTA

XP_057773179.1
MNIVKGVADLFWRTSSPQSGEHGSSSQSGRFSPPTPKIVFSEVGDEAILKELLERYTSAVNEVEKRKLFHIFLKQFLTVFRDWKPFNLGSSPEEALTDLPTRNVADVVVGCSFGQPAEIILILIGEVTCITKLLTDNQGSITTRLNIPNESWMALDALTLVTLSIHNCKVFGYHAGIQKLTALMKATVVQLKTITSALPADESLSITMVENAGVLQQILIHVVSIICNFIDFHLSKEENVLIRSTGMEVSAGRSRETYND...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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