Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001501`

染色体: Chr07 坐标: 11977709-11985359 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001501`
名称	SmilChr07G001501
描述	serine/threonine-protein kinase CTR1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	11977709 - 11985359 / `+`

ID 对照

NCBI Gene ID	`LOC130992552`
GeneID	`130992552`
locus_tag	`-`
NCBI Name	`LOC130992552`
原始查询	`SmilChr07G001501`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein kinase CTR1-like
产物	serine/threonine-protein kinase CTR1-like
Arabidopsis	`AT4G24480` (AT4G24480) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828550] identity=54.4; qcov=1.12; evalue=0; confidence=high
Rice	`Os04g0610900` (OsCTR3) - identity=57.6; qcov=0.824; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF14381 (EDR1_CTR1_ARMC3_pept)
InterPro	-
eggNOG	-
NR	GeneID:130992552

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057773210.1`
2	Cytosol	细胞质基质	0.80000	`XP_057773210.1`
3	Cytoplasm	细胞质	0.40000	`XP_057773210.1`
4	Nucleus	细胞核	0.00000	`XP_057773210.1`
5	Chromosome	染色体	0.00000	`XP_057773210.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:11978149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,C14,C72,C73
`Chr7:11978283`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B139,B35,B63,C25,C56
`Chr7:11978554`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr7:11979078`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr7:11981030`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr7:11981477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B29,B64
`Chr7:11981481`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,C74
`Chr7:11981484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B137,B2,B27,B71,C57
`Chr7:11981703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B102,B61,B85,B90,C76
`Chr7:11981704`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B136,B38,B94,C13,C72
`Chr7:11981733`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,C32,C68,C8
`Chr7:11983383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,C32,C68,C8,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773210.1

854 aa

427

854

EDR1_CTR1_ARMC3_pept

PK_Tyr_Ser-Thr

Pkinase

PF14381 EDR1_CTR1_ARMC3_pept 202-410 aa PF07714 PK_Tyr_Ser-Thr 584-838 aa PF00069 Pkinase 585-836 aa

XP_057773211.1

851 aa

426

851

EDR1_CTR1_ARMC3_pept

PK_Tyr_Ser-Thr

Pkinase

PF14381 EDR1_CTR1_ARMC3_pept 202-410 aa PF07714 PK_Tyr_Ser-Thr 581-835 aa PF00069 Pkinase 582-833 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773210.1`	Pfam	`PF14381`	EDR1_CTR1_ARMC3_pept	Domain	202	410	1.7e-71	240.9	EDR1/CTR1/ARMC3, peptidase-like
`XP_057773210.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	584	838	8.4e-65	219.4	Protein tyrosine and serine/threonine kinase
`XP_057773210.1`	Pfam	`PF00069`	Pkinase	Domain	585	836	3.5e-53	181.4	Protein kinase domain
`XP_057773211.1`	Pfam	`PF14381`	EDR1_CTR1_ARMC3_pept	Domain	202	410	1.7e-71	240.9	EDR1/CTR1/ARMC3, peptidase-like
`XP_057773211.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	581	835	8.4e-65	219.3	Protein tyrosine and serine/threonine kinase
`XP_057773211.1`	Pfam	`PF00069`	Pkinase	Domain	582	833	3.5e-53	181.4	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917228.1
TGCGCAAGTTGGCGCTTAAAATAGTCGGCTGAAACCCAACAGTATGTATAATGCTCTTTCTACTCCTTCTACGGCAGCGCATATATTATATACACATCTTTCTCACTTCATTCATTAGTGCGTGTGCTCCGTGTGTTTCATATCCATCTGCTCTTCTTCTTCGCGTTGGGAGTCTCTTTTTTGAATTTTCTTTGTTTCTTCTTCTTGTTTAGTTTTTTGATGAGTTTGAATGTGCATGAGTTGTCGATCACTTATGGTTT...

XM_057917227.1
TCTACTCCTTCTACGGCAGCGCATATATTATATACACATCTTTCTCACTTCATTCATTAGTGCGTGTGCTCCGTGTGTTTCATATCCATCTGCTCTTCTTCTTCGCGTTGGGAGTCTCTTTTTTGAATTTTCTTTGTTTCTTCTTCTTGTTTAGTTTTTTGATGAGTTTGAATGTGCATGAGTTGTCGATCACTTATGGTTTTTGGTGTATGAGAATGTGATTTGGATTGTAGTTCGCCGGCGGTGATTTTGGGTGCTTG...

CDS

2 records

下载 CDS FASTA

LOC130992552
ATGCCGCATCGAACCACTTACTTTTTCCCGCGGCAATTTCCTGACCGCAGCTTGGCGGCGGATCACGAGAAGAAGCAGGTGGTGGTAGATGAGATTCAGGACAAGGAGGACTCCCCTCCTAAAGGTGGAGTCACGTGCGACAAGATTCACGGGAAGCAGCTCGCCGCCTTCGTCAACTGGCTTTCCGACAAGAAACACAGGGACAAATCCCAATTCGCCAAGATCAAATCGTACGATCACGACCATGCTATTGAGGAAGA...

Protein

2 records

下载 Protein FASTA

XP_057773210.1
MPHRTTYFFPRQFPDRSLAADHEKKQVVVDEIQDKEDSPPKGGVTCDKIHGKQLAAFVNWLSDKKHRDKSQFAKIKSYDHDHAIEEEDESTQRLLPPPEQPTNESGIERQISLQRVSSEGSTSYAGSLFSGTTLDGNWSANATGILKEPAGVKEEEGDGVMQRYKEGYYLQLMFAKRLTQQAALVTEPLLLPERRMGGSPDADTISYRLWVSGCLSYSDKITDGFYNILGMNPYLWLMCNEVEEGRRMPSLIALSNVEPN...

XP_057773211.1
MPHRTTYFFPRQFPDRSLAADHEKKQVVVDEIQDKEDSPPKGGVTCDKIHGKQLAAFVNWLSDKKHRDKSQFAKIKSYDHDHAIEEEDESTQRLLPPPEQPTNESGIERQISLQRVSSEGSTSYAGSLFSGTTLDGNWSANATGILKEPAGVKEEEGDGVMQRYKEGYYLQLMFAKRLTQQAALVTEPLLLPERRMGGSPDADTISYRLWVSGCLSYSDKITDGFYNILGMNPYLWLMCNEVEEGRRMPSLIALSNVEPN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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