Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001507`

染色体: Chr07 坐标: 12015231-12020543 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001507`
名称	SmilChr07G001507
描述	probable rhamnogalacturonate lyase B
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	12015231 - 12020543 / `-`

ID 对照

NCBI Gene ID	`LOC130992570`
GeneID	`130992570`
locus_tag	`-`
NCBI Name	`LOC130992570`
原始查询	`SmilChr07G001507`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable rhamnogalacturonate lyase B
产物	probable rhamnogalacturonate lyase B
Arabidopsis	`AT1G09890` (AT1G09890) Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837521] identity=64.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os08g0554100` - identity=61.3; qcov=1.01; evalue=0; confidence=high
GO	GO:0030246 (carbohydrate binding)
KEGG	-
Pfam	PF06045 (Rhamnogal_lyase); PF14683 (CBM-like); PF14686 (fn3_3)
InterPro	-
eggNOG	-
NR	GeneID:130992570

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.60000	`XP_057773237.1`
2	Vacuole	液泡	0.40000	`XP_057773237.1`
3	Nucleus	细胞核	0.00000	`XP_057773237.1`
4	Chromosome	染色体	0.00000	`XP_057773237.1`
5	Centromere	着丝粒	0.00000	`XP_057773237.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:12015732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr7:12016667`	`G`	`GTA`	2bp_insertion	frameshift_variant	1	B140
`Chr7:12016667`	`G`	`GTA`	2bp_insertion	CDS_variant	1	B140
`Chr7:12016946`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B117,B26,B95,D4
`Chr7:12018774`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:12019050`	`C`	`T`	EMS_canonical_SNV	stop_gained	8	A15,B16,B19,B53,B95,C29,C54,C78
`Chr7:12019299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr7:12019471`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B107,B23,B5,B76,C80
`Chr7:12019515`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	A8,B70,C40
`Chr7:12019515`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A8,B70,C40
`Chr7:12019678`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,C69
`Chr7:12019679`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773237.1

636 aa

318

636

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 5-203 aa PF14686 fn3_3 359-431 aa PF14683 CBM-like 445-633 aa

XP_057773238.1

635 aa

318

635

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 5-203 aa PF14686 fn3_3 359-431 aa PF14683 CBM-like 445-632 aa

XP_057773239.1

629 aa

314

629

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 5-203 aa PF14686 fn3_3 352-424 aa PF14683 CBM-like 438-626 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773237.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	5	203	3.1e-90	302.0	Rhamnogalacturonate lyase family
`XP_057773237.1`	Pfam	`PF14686`	fn3_3	Domain	359	431	2.1e-23	82.6	Polysaccharide lyase family 4, domain II
`XP_057773237.1`	Pfam	`PF14683`	CBM-like	Domain	445	633	3.1e-50	170.9	Polysaccharide lyase family 4, domain III
`XP_057773238.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	5	203	3.1e-90	302.0	Rhamnogalacturonate lyase family
`XP_057773238.1`	Pfam	`PF14686`	fn3_3	Domain	359	431	2e-23	82.6	Polysaccharide lyase family 4, domain II
`XP_057773238.1`	Pfam	`PF14683`	CBM-like	Domain	445	632	2.8e-50	171.0	Polysaccharide lyase family 4, domain III
`XP_057773239.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	5	203	2.9e-90	302.0	Rhamnogalacturonate lyase family
`XP_057773239.1`	Pfam	`PF14686`	fn3_3	Domain	352	424	2e-23	82.6	Polysaccharide lyase family 4, domain II
`XP_057773239.1`	Pfam	`PF14683`	CBM-like	Domain	438	626	3.3e-50	170.8	Polysaccharide lyase family 4, domain III

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057917256.1
AACTCACAATATTTCATTTGTCTGCAGAGAATATATAAGAAGGATAAAACAATATGTCAACTGCAAAACTACGGTTGCACATTCGAGAACGCTATGTGGCGATGGAAAATGCCATCGTTAGAGTCACATTATCAAAACCAGATGGCATTGTAACTGCAATAAAATACAATCACATGGACAATCTGCTGGAAACAGCCAACGATGAATCTAACAGAGGGTACTGGGACTTGGTTTGGAGTGAAGCAGGAAGTAGTGGAACT...

XM_057917255.1
AACTCACAATATTTCATTTGTCTGCAGAGAATATATAAGAAGGATAAAACAATATGTCAACTGCAAAACTACGGTTGCACATTCGAGAACGCTATGTGGCGATGGAAAATGCCATCGTTAGAGTCACATTATCAAAACCAGATGGCATTGTAACTGCAATAAAATACAATCACATGGACAATCTGCTGGAAACAGCCAACGATGAATCTAACAGAGGGTACTGGGACTTGGTTTGGAGTGAAGCAGGAAGTAGTGGAACT...

CDS

3 records

下载 CDS FASTA

LOC130992570
ATGTCAACTGCAAAACTACGGTTGCACATTCGAGAACGCTATGTGGCGATGGAAAATGCCATCGTTAGAGTCACATTATCAAAACCAGATGGCATTGTAACTGCAATAAAATACAATCACATGGACAATCTGCTGGAAACAGCCAACGATGAATCTAACAGAGGGTACTGGGACTTGGTTTGGAGTGAAGCAGGAAGTAGTGGAACTACAGGGACATATGATAGAATTGCTGCAACAAATTTTGAAGTTGTGGTGGAAAC...

Protein

3 records

下载 Protein FASTA

XP_057773237.1
MSTAKLRLHIRERYVAMENAIVRVTLSKPDGIVTAIKYNHMDNLLETANDESNRGYWDLVWSEAGSSGTTGTYDRIAATNFEVVVETEEQIELSFSRKWDTSLQGKLAPLNIDKRFILLRDSSGFYSYAIYERLEGWPGFNLDETRIAFKLKKNKFRYMAMADNRRRYMPLPDDRLPGRGQALDYPEAVLLVDPIDPQFKGEVDDKYSYSGENEEVKVHGWISMDGGVGFWQIMASNEFRTGGSTKQDLTSHVGPTTLAM...

XP_057773238.1
MSTAKLRLHIRERYVAMENAIVRVTLSKPDGIVTAIKYNHMDNLLETANDESNRGYWDLVWSEAGSSGTTGTYDRIAATNFEVVVETEEQIELSFSRKWDTSLQGKLAPLNIDKRFILLRDSSGFYSYAIYERLEGWPGFNLDETRIAFKLKKNKFRYMAMADNRRRYMPLPDDRLPGRGQALDYPEAVLLVDPIDPQFKGEVDDKYSYSGENEEVKVHGWISMDGGVGFWQIMASNEFRTGGSTKQDLTSHVGPTTLAM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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