当前解析结果
SmilChr07G001519| 统一新 Gene ID | SmilChr07G001519 |
|---|---|
| 名称 | SmilChr07G001519 |
| 描述 | E3 ubiquitin-protein ligase WAV3-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 12164206 - 12167003 / + |
| NCBI Gene ID | LOC130992564 |
|---|---|
| GeneID | 130992564 |
| locus_tag | - |
| NCBI Name | LOC130992564 |
| 原始查询 | SmilChr07G001519 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase WAV3-like |
| 产物 | E3 ubiquitin-protein ligase WAV3-like |
| Arabidopsis | AT5G49665 (AT5G49665)Zinc finger (C3HC4-type RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835029] identity=48; qcov=1.11; evalue=0; confidence=high |
| Rice | Os04g0101800 (SOR1)- identity=41.3; qcov=1.11; evalue=1.97e-149; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00092 (VWA); PF00097 (zf-C3HC4); PF13519 (VWA_2); PF13639 (zf-RING_2); PF13768 (VWA_3); PF17123 (zf-RING_11); PF25243 (WAV3_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992564 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057773229.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057773229.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057773229.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773229.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773229.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:12164649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,C72 |
Chr7:12164652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B48 |
Chr7:12164694 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B93 |
Chr7:12164795 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr7:12164796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr7:12165005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr7:12165110 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B93,C71 |
Chr7:12165188 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B64 |
Chr7:12166208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B62,C74 |
Chr7:12166397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,C83 |
Chr7:12166547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,C6 |
Chr7:12166577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773229.1PF13639
zf-RING_2 94-140 aa
PF17123
zf-RING_11 96-125 aa
PF00097
zf-C3HC4 96-140 aa
PF00092
VWA 286-416 aa
PF13768
VWA_3 286-420 aa
PF13519
VWA_2 287-392 aa
PF25243
WAV3_C 552-624 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773229.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 94 | 140 | 1.4e-08 | 35.6 | Ring finger domain |
XP_057773229.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 96 | 125 | 5.7e-08 | 33.0 | RING-like zinc finger |
XP_057773229.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 96 | 140 | 2.3e-05 | 24.9 | Zinc finger, C3HC4 type (RING finger) |
XP_057773229.1 |
Pfam | PF00092 |
VWA | Domain | 286 | 416 | 4.6e-13 | 50.5 | von Willebrand factor type A domain |
XP_057773229.1 |
Pfam | PF13768 |
VWA_3 | Domain | 286 | 420 | 5.5e-13 | 50.0 | von Willebrand factor type A domain |
XP_057773229.1 |
Pfam | PF13519 |
VWA_2 | Domain | 287 | 392 | 7e-19 | 69.2 | von Willebrand factor type A domain |
XP_057773229.1 |
Pfam | PF25243 |
WAV3_C | Domain | 552 | 624 | 2.7e-34 | 117.6 | E3 ubiquitin-protein ligase WAV3-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。