Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001520`

染色体: Chr07 坐标: 12177103-12184386 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001520`
名称	SmilChr07G001520
描述	uncharacterized SmilChr07G001520
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	12177103 - 12184386 / `-`

ID 对照

NCBI Gene ID	`LOC130992595`
GeneID	`130992595`
locus_tag	`-`
NCBI Name	`LOC130992595`
原始查询	`SmilChr07G001520`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoadenosine phosphosulfate (PAPS) reductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831843]; symbol=AT5G03430; hit=AT5G03430; species=arabidopsis; confidence=high
产物	phosphoadenosine phosphosulfate (PAPS) reductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831843]; symbol=AT5G03430; hit=AT5G03430; species=arabidopsis; confidence=high
Arabidopsis	`AT5G03430` (AT5G03430) phosphoadenosine phosphosulfate (PAPS) reductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831843] identity=70.1; qcov=0.988; evalue=0; confidence=high
Rice	`Os01g0259600` - identity=66.4; qcov=0.278; evalue=8.18e-57; confidence=weak
GO	GO:0003919 (FMN adenylyltransferase activity); GO:0006747 (FAD biosynthetic process)
KEGG	-
Pfam	PF00994 (MoCF_biosynth); PF01507 (PAPS_reduct)
InterPro	-
eggNOG	-
NR	GeneID:130992595

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057773277.1`
2	Nucleus	细胞核	0.60000	`XP_057773277.1`
3	Chromosome	染色体	0.00000	`XP_057773277.1`
4	Centromere	着丝粒	0.00000	`XP_057773277.1`
5	Chromatin	染色质	0.00000	`XP_057773277.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:12178827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr7:12180674`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr7:12181213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:12183759`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773277.1

504 aa

252

504

PAPS_reduct

MoCF_biosynth

PF01507 PAPS_reduct 38-202 aa PF00994 MoCF_biosynth 265-362 aa

XP_057773278.1

504 aa

252

504

PAPS_reduct

MoCF_biosynth

PF01507 PAPS_reduct 38-202 aa PF00994 MoCF_biosynth 265-362 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773277.1`	Pfam	`PF01507`	PAPS_reduct	Domain	38	202	1.2e-24	88.0	Phosphoadenosine phosphosulfate reductase domain
`XP_057773277.1`	Pfam	`PF00994`	MoCF_biosynth	Domain	265	362	1.5e-16	61.1	Probable molybdopterin binding domain
`XP_057773278.1`	Pfam	`PF01507`	PAPS_reduct	Domain	38	202	1.2e-24	88.0	Phosphoadenosine phosphosulfate reductase domain
`XP_057773278.1`	Pfam	`PF00994`	MoCF_biosynth	Domain	265	362	1.5e-16	61.1	Probable molybdopterin binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917295.1
TGTAGAGCAATCCGAATGTTAATCCGAATAAAAAGAAATAAAAGGCGAGGGCCGCGAGACACAGCCGCACAAGTGATGCACAAAAGGATTTTTTCTAAATTTGCGAACCTTCTTAAATCCTACTCTCCTTTGAGTCTTGAAATAAGGAACCTTGCAGAAGGATCATTTGATTTAAAGTCAAAATGGAGATCGATAAGGCCATAAGAGAAAGTGATGATACAAGGTTGAAGACAAAGTACAACAATGCCGTCTACGTAATC...

XM_057917294.1
AATAAAAAGAAATAAAAGGCGAGGGCCGCGAGACACAGCCGCACAAGTGATGCACAAAAGGATTTTTTCTAAATTTGCGAACCTTCTTAAATCCTACTCTCCTTTGAGTCTTGAAATAAGGCAAATATTTCTTCAGTTTCTTCCAGCATAAATCTCCAAGAACCTTGCAGAAGGATCATTTGATTTAAAGTCAAAATGGAGATCGATAAGGCCATAAGAGAAAGTGATGATACAAGGTTGAAGACAAAGTACAACAATGC...

CDS

2 records

下载 CDS FASTA

LOC130992595
ATGGAGATCGATAAGGCCATAAGAGAAAGTGATGATACAAGGTTGAAGACAAAGTACAACAATGCCGTCTACGTAATCCAAAGAGCTCTTGCTCTTTACTCTGTTGAAGAGGTTGCCTTCAGCTTCAATGGTGGAAAAGATTCAACTGTTTTGTTGCACCTTCTTAGGGCAGGCCATTATTTGCACAAGGTTGGAAAGAATCCGTCCGCTGCAGATACTGAAATAACATTTCCAATACGGACCATTTATTTTGAGAGTTC...

Protein

2 records

下载 Protein FASTA

XP_057773277.1
MEIDKAIRESDDTRLKTKYNNAVYVIQRALALYSVEEVAFSFNGGKDSTVLLHLLRAGHYLHKVGKNPSAADTEITFPIRTIYFESSSAFPEINSFTYDIASIYNLQMDIIRLDFKSGLEGLLKAHPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRDVWAFLLTCKVQYCSLYDQGYTSIGSIHDTVPNALLCHSKTKGNEQNYKPAYLLSDGRLERAGRVKKGTFKPSPAVSNGFKHDDSHFKRN...

XP_057773278.1
MEIDKAIRESDDTRLKTKYNNAVYVIQRALALYSVEEVAFSFNGGKDSTVLLHLLRAGHYLHKVGKNPSAADTEITFPIRTIYFESSSAFPEINSFTYDIASIYNLQMDIIRLDFKSGLEGLLKAHPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRDVWAFLLTCKVQYCSLYDQGYTSIGSIHDTVPNALLCHSKTKGNEQNYKPAYLLSDGRLERAGRVKKGTFKPSPAVSNGFKHDDSHFKRN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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