Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001524`

染色体: Chr07 坐标: 12230906-12255744 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001524`
名称	SmilChr07G001524
描述	uncharacterized SmilChr07G001524
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	12230906 - 12255744 / `+`

ID 对照

NCBI Gene ID	`LOC130992538`
GeneID	`130992538`
locus_tag	`-`
NCBI Name	`LOC130992538`
原始查询	`SmilChr07G001524`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	symplekin [Source:NCBI gene (formerly Entrezgene);Acc:839651]; symbol=AT1G27595; hit=AT1G27595; species=arabidopsis; confidence=high
产物	symplekin [Source:NCBI gene (formerly Entrezgene);Acc:839651]; symbol=AT1G27595; hit=AT1G27595; species=arabidopsis; confidence=high
Arabidopsis	`AT1G27595` (AT1G27595) symplekin [Source:NCBI gene (formerly Entrezgene);Acc:839651] identity=52.4; qcov=0.917; evalue=2.4e-78; confidence=high
Rice	`Os07g0693900` - identity=38.5; qcov=0.722; evalue=4.19e-25; confidence=medium
GO	-
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage))
Pfam	PF11935 (SYMPK_PTA1_N); PF12295 (Symplekin_C)
InterPro	-
eggNOG	-
NR	GeneID:130992538

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773188.1`
2	Cytosol	细胞质基质	0.60000	`XP_057773192.1`
3	Cytoplasm	细胞质	0.40000	`XP_057773192.1`
4	Nucleus membrane	核膜	0.20000	`XP_057773188.1`
5	Chromosome	染色体	0.00000	`XP_057773188.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:12231219`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B131
`Chr7:12231219`	`GC`	`G`	1bp_deletion	CDS_variant	1	B131
`Chr7:12232260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B14,B80,C30,C81
`Chr7:12243656`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr7:12244395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C17,C63
`Chr7:12249730`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B115

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773188.1

1333 aa

666

1333

SYMPK_PTA1_N

Symplekin_C

PF11935 SYMPK_PTA1_N 98-317 aa PF12295 Symplekin_C 1100-1278 aa

XP_057773190.1

1151 aa

576

1151

SYMPK_PTA1_N

Symplekin_C

PF11935 SYMPK_PTA1_N 11-135 aa PF12295 Symplekin_C 918-1096 aa

XP_057773191.1

275 aa

138

275

SYMPK_PTA1_N

PF11935 SYMPK_PTA1_N 98-246 aa

XP_057773192.1

252 aa

126

252

SYMPK_PTA1_N

PF11935 SYMPK_PTA1_N 98-245 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773188.1`	Pfam	`PF11935`	SYMPK_PTA1_N	Repeat	98	317	7.6e-36	124.6	Symplekin/PTA1 N-terminal
`XP_057773188.1`	Pfam	`PF12295`	Symplekin_C	Family	1100	1278	5.5e-64	216.2	Symplekin tight junction protein C terminal
`XP_057773190.1`	Pfam	`PF11935`	SYMPK_PTA1_N	Repeat	11	135	3.3e-22	80.0	Symplekin/PTA1 N-terminal
`XP_057773190.1`	Pfam	`PF12295`	Symplekin_C	Family	918	1096	4.6e-64	216.4	Symplekin tight junction protein C terminal
`XP_057773191.1`	Pfam	`PF11935`	SYMPK_PTA1_N	Repeat	98	246	2.8e-21	76.9	Symplekin/PTA1 N-terminal
`XP_057773192.1`	Pfam	`PF11935`	SYMPK_PTA1_N	Repeat	98	245	8.3e-21	75.4	Symplekin/PTA1 N-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057917205.1
CAAACACATCCGAATTATATGAGGAGAGTCCGCCTCCGGCTCTCATTTCCTTTCCATTTAAATAAAAAATTAGGAAGCCCGCAGCCCTTTCCTCCGTTCATAAACGTCCCCATCTATATCTATATCAATATCATAATAATCCCAAGTCCCAACCCCTTCCAAATCTGAGTTTCTGCTTCCCCAATTCAAAACCCTAGAAACCCTTTCTCTACACTAACTCCAATTTTACCTACTTCAGGATTTTTCCTCTTTCTCAATCT...

XM_057917208.1
ACACATCCGAATTATATGAGGAGAGTCCGCCTCCGGCTCTCATTTCCTTTCCATTTAAATAAAAAATTAGGAAGCCCGCAGCCCTTTCCTCCGTTCATAAACGTCCCCATCTATATCTATATCAATATCATAATAATCCCAAGTCCCAACCCCTTCCAAATCTGAGTTTCTGCTTCCCCAATTCAAAACCCTAGAAACCCTTTCTCTACACTAACTCCAATTTTACCTACTTCAGGATTTTTCCTCTTTCTCAATCTATA...

CDS

4 records

下载 CDS FASTA

LOC130992538
ATGGCCGGCGCCCTGGCCAGGGACCAGGCGCTCTCCCTGCTCGCTGCGGCGAACAACCATGGCGATTTGGCCGTCAAGCTATCGTCATTGAAGCAGGCCAAAGACATCTTGTTTTCTGTCGAGCCGTCCCAGGCGGCGGAGCTTTTTCCTTACTTGGCCGAGCTTCAGTCTTCCCCTGAAACGCTAGTCAGGAAATATCTCCTTGAGGTAATTGATGAGGTTGGGGCCAAAACAAGCACACATCTTTGCATATTATTTCC...

Protein

4 records

下载 Protein FASTA

XP_057773188.1
MAGALARDQALSLLAAANNHGDLAVKLSSLKQAKDILFSVEPSQAAELFPYLAELQSSPETLVRKYLLEVIDEVGAKTSTHLCILFPVLLTFLKDNNPVVAKQSIITGTKIFSSVLEELALQFQRRGIVERWLEELWTGLIKFRDAVLGIIFEAGPLGPKLLAIKFLETFILCFTLDSNEFEMCNPEVMVRQGRMFNVSWIADSHPILNPPALISDANRYLGVLLDMLLSASNFPGCVTITAVNSLVAIARKRPVYYKTV...

XP_057773190.1
MCNPEVMVRQGRMFNVSWIADSHPILNPPALISDANRYLGVLLDMLLSASNFPGCVTITAVNSLVAIARKRPVYYKTVLTALLDFSPGVEMAKGRHTVSIQYSLRTAFLGFLRCTHPLMTESREKLLKELRAMNAGDAADQVIRQIDKIMRNNERASRDLQFNKDEQLSSQLHISGDLTKKRTVPLDNEDQNNIFDASSKRFRHSPHNNTTATADSSDAGQDHVNGISAKPPVLDGDLTPVEQMIAMIGALIAEGERGVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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