Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001531`

染色体: Chr07 坐标: 12396374-12399200 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001531`
名称	SmilChr07G001531
描述	E3 ubiquitin-protein ligase RSL1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	12396374 - 12399200 / `+`

ID 对照

NCBI Gene ID	`LOC130992629`
GeneID	`130992629`
locus_tag	`-`
NCBI Name	`LOC130992629`
原始查询	`SmilChr07G001531`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase RSL1-like
产物	E3 ubiquitin-protein ligase RSL1-like
Arabidopsis	`AT3G14250` (AT3G14250) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820645] identity=38.1; qcov=0.954; evalue=3.3e-61; confidence=medium
Rice	`Os08g0451800` - identity=38.7; qcov=0.951; evalue=4.79e-68; confidence=medium
GO	GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF01485 (IBR); PF22191 (IBR_1)
InterPro	-
eggNOG	-
NR	GeneID:130992629

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773328.1`
2	Cytoplasm	细胞质	0.40000	`XP_057773327.1`
3	Endoplasmic reticulum	内质网	0.40000	`XP_057773327.1`
4	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057773327.1`
5	Chromosome	染色体	0.00000	`XP_057773328.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:12398418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B118,B14,B53,B73,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773327.1

378 aa

189

378

IBR

IBR_1

PF01485 IBR 256-305 aa PF01485 IBR 325-373 aa PF22191 IBR_1 333-368 aa

XP_057773328.1

283 aa

142

283

IBR

IBR_1

PF01485 IBR 161-210 aa PF01485 IBR 229-279 aa PF22191 IBR_1 238-273 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773327.1`	Pfam	`PF01485`	IBR	Domain	256	305	4.5e-16	59.4	IBR domain, a half RING-finger domain
`XP_057773327.1`	Pfam	`PF01485`	IBR	Domain	325	373	4.5e-16	59.4	IBR domain, a half RING-finger domain
`XP_057773327.1`	Pfam	`PF22191`	IBR_1	Domain	333	368	1.9e-08	34.7	IBR domain
`XP_057773328.1`	Pfam	`PF01485`	IBR	Domain	161	210	9e-17	61.6	IBR domain, a half RING-finger domain
`XP_057773328.1`	Pfam	`PF01485`	IBR	Domain	229	279	9e-17	61.6	IBR domain, a half RING-finger domain
`XP_057773328.1`	Pfam	`PF22191`	IBR_1	Domain	238	273	5.9e-09	36.4	IBR domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917345.1
AGATAGATATGTGATACGCGCAACGTATGTTGACTGTAGAATATTAGTGCGAATGATTATTAAATAAAATGAATACAAAACTATATTTATCACCAATAATGCTGCACTGGAATTGCATCTCATCCAACGCTGATTATGATTTCGGTGACACTCAAGTGGCCATCGGCCCTTAAATTTTCCGGCCTAATCCCGGCCACTTTCGAAGCCTTTGTTTCCACATACCACCACCTCTCCACCTTTCTCCGGTCGGACTCCGGCTC...

XM_057917344.1
AGATAGATATGTGATACGCGCAACGTATGTTGACTGTAGAATATTAGTGCGAATGATTATTAAATAAAATGAATACAAAACTATATTTATCACCAATAATGCTGCACTGGAATTGCATCTCATCCAACGCTGATTATGATTTCGGTGACACTCAAGTGGCCATCGGCCCTTAAATTTTCCGGCCTAATCCCGGCCACTTTCGAAGCCTTTGTTTCCACATACCACCACCTCTCCACCTTTCTCCGGTCGGACTCCGGCTC...

CDS

2 records

下载 CDS FASTA

LOC130992629
ATGATTTCGGTGACACTCAAGTGGCCATCGGCCCTTAAATTTTCCGGCCTAATCCCGGCCACTTTCGAAGCCTTTGTTTCCACATACCACCACCTCTCCACCTTTCTCCGGTCGGACTCCGGCTCTTCAATCGTCTCCTTCGTAATGTACTCCGCCGGCACTTTTCTCGCAATCACTCTGCCTGCATGGATATTTCTCTACTTCAGAAAAATCAATAAACCCTTCATTCGCGCCGCCGATTCGGCGCCCCTCGTCAACGC...

LOC130992629
ATGTTTCCTATCTCAGCATACTCTGGAGGAATCACGAGAGGCCTAGATGTTGCTTACGAAGATGCATTGACAATTGGTGATGCTGATTACGCTGAGGAACTTCAGTTCCAAGAAACACTGATAGCCTCATTTTTCACTTCAGAGTTGGAAAATATTCCATCTTCATCTGTGCAAGAACCTAACGTCTACAAAGGAGTGACGAAGCCTGAGATTGCTGAGGATTCATACCAAAGCTTCTGTGGAATATGTTTGGAAAACAA...

Protein

2 records

下载 Protein FASTA

XP_057773327.1
MISVTLKWPSALKFSGLIPATFEAFVSTYHHLSTFLRSDSGSSIVSFVMYSAGTFLAITLPAWIFLYFRKINKPFIRAADSAPLVNAPSPERRVGPIVDNAYSGGITRGLDVAYEDALTIGDADYAEELQFQETLIASFFTSELENIPSSSVQEPNVYKGVTKPEIAEDSYQSFCGICLENKESWLMFANETCDHSFCYECTTSHVVAKIQDKVRDIACPAPGCNAVLDFDACRLMISDEALVQWDESLCMSLIPESQKL...

XP_057773328.1
MFPISAYSGGITRGLDVAYEDALTIGDADYAEELQFQETLIASFFTSELENIPSSSVQEPNVYKGVTKPEIAEDSYQSFCGICLENKESWLMFANETCDHSFCYECTTSHVVAKIQDKVRDIACPAPGCNAVLDFDACRLMISDEALVQWDESLCMSLIPESQKLYCPFRDCSALLVNDHGDAFEKLRCLVCSRWFCAQCRVPWHVDFTCKEFQKLYAKKGGKVDKIVKELAKKKSWQKCPKCKMYVEKTEGCVHITCRC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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