Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001532

染色体: Chr07 坐标: 12402930-12406110 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001532
名称SmilChr07G001532
描述receptor protein-tyrosine kinase CEPR1-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向12402930 - 12406110 / +

ID 对照

NCBI Gene IDLOC130992551
GeneID130992551
locus_tag-
NCBI NameLOC130992551
原始查询SmilChr07G001532

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述receptor protein-tyrosine kinase CEPR1-like
产物receptor protein-tyrosine kinase CEPR1-like
ArabidopsisAT5G49660 (XIP1)
Leucine-rich repeat transmembrane protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835028]
identity=61.3; qcov=0.964; evalue=0; confidence=high
RiceOs12g0632900
-
identity=52.2; qcov=0.973; evalue=0; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0009755 (hormone-mediated signaling pathway)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8)
InterPro-
eggNOG-
NRGeneID:130992551

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057773209.1
2 Nucleus 细胞核 0.00000 XP_057773209.1
3 Chromosome 染色体 0.00000 XP_057773209.1
4 Centromere 着丝粒 0.00000 XP_057773209.1
5 Chromatin 染色质 0.00000 XP_057773209.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:12403218 GC G 1bp_deletion frameshift_variant 1 B1
Chr7:12403218 GC G 1bp_deletion CDS_variant 1 B1
Chr7:12403253 G A EMS_canonical_SNV CDS_variant 4 B14,B53,B73,C77
Chr7:12403297 C T EMS_canonical_SNV CDS_variant 2 C79,C87
Chr7:12403909 G A EMS_canonical_SNV CDS_variant 1 C41
Chr7:12403936 G A EMS_canonical_SNV CDS_variant 1 C70
Chr7:12404472 C T EMS_canonical_SNV CDS_variant 1 B97
Chr7:12404957 G A EMS_canonical_SNV CDS_variant 3 B114,C38,C86
Chr7:12404992 G A EMS_canonical_SNV CDS_variant 1 B88
Chr7:12405777 GC G 1bp_deletion frameshift_variant 1 C75
Chr7:12405777 GC G 1bp_deletion CDS_variant 1 C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057773209.1
951 aa
N
1
476
951
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF00560 LRR_1 138-160 aa PF00560 LRR_1 236-258 aa PF00560 LRR_1 452-474 aa PF13855 LRR_8 452-509 aa PF00560 LRR_1 500-522 aa PF00560 LRR_1 525-543 aa PF00069 Pkinase 654-918 aa PF07714 PK_Tyr_Ser-Thr 656-919 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057773209.1 Pfam PF00560 LRR_1 Repeat 138 160 9.4e-35 111.9 Leucine Rich Repeat
XP_057773209.1 Pfam PF00560 LRR_1 Repeat 236 258 9.4e-35 111.9 Leucine Rich Repeat
XP_057773209.1 Pfam PF00560 LRR_1 Repeat 452 474 9.4e-35 111.9 Leucine Rich Repeat
XP_057773209.1 Pfam PF13855 LRR_8 Repeat 452 509 8.8e-24 83.8 Leucine rich repeat
XP_057773209.1 Pfam PF00560 LRR_1 Repeat 500 522 9.4e-35 111.9 Leucine Rich Repeat
XP_057773209.1 Pfam PF00560 LRR_1 Repeat 525 543 9.4e-35 111.9 Leucine Rich Repeat
XP_057773209.1 Pfam PF00069 Pkinase Domain 654 918 9.6e-48 163.6 Protein kinase domain
XP_057773209.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 656 919 1.5e-38 133.3 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057917226.1
TTCTCTCCATGGCTCCCAAACACCACCTCCTCCTTCTCCTCCTCATGCTCTCAACCTACACCTCTTTCCAAACAAACCCCAATAACCAAACCTATTTCTTCCATCTCATCAACAACTACGCCTCGGGGAACTCTCTCTCCAGCTGGGATTCCACCAATGGGAAGACCTACTGCTACTACGCCGGCGTCACCTGCGACGACGAGCAAAACATAGTCGGAATCGACATCTCCGGCTGGTCACTGTCCGGGACATTTCCCCCC...

CDS

1 records

下载 CDS FASTA
LOC130992551
ATGGCTCCCAAACACCACCTCCTCCTTCTCCTCCTCATGCTCTCAACCTACACCTCTTTCCAAACAAACCCCAATAACCAAACCTATTTCTTCCATCTCATCAACAACTACGCCTCGGGGAACTCTCTCTCCAGCTGGGATTCCACCAATGGGAAGACCTACTGCTACTACGCCGGCGTCACCTGCGACGACGAGCAAAACATAGTCGGAATCGACATCTCCGGCTGGTCACTGTCCGGGACATTTCCCCCCCAAGTATG...

Protein

1 records

下载 Protein FASTA
XP_057773209.1
MAPKHHLLLLLLMLSTYTSFQTNPNNQTYFFHLINNYASGNSLSSWDSTNGKTYCYYAGVTCDDEQNIVGIDISGWSLSGTFPPQVCSYLPKLRLLRLGHNNFHGELPLIANCSFLEELNASSLYLTGHLPDFTPLSSLRVLDLSYNLFSGDFPLSLTNLTNLEVLNFNENPLFNLWELPETIAKLIKLKSLILSTCMLRGKIPTSVWNITSLIDLELSGNYLAGRLPKEVGLLQNLQHLELYYNELEGEIPVEIGNLTQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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